Aliases for NFIA-AS1 Gene

Data sources for NFIA-AS1 Gene:

Subcategory (RNA class) for NFIA-AS1 Gene

lncRNA

Aliases for NFIA-AS1 Gene

External Ids for NFIA-AS1 Gene

Summaries for NFIA-AS1 Gene

GeneCards Summary for NFIA-AS1 Gene

NFIA-AS1 (NFIA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with NFIA-AS1 include Atherosclerosis Susceptibility and High Grade Glioma.

Additional gene information for NFIA-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NFIA-AS1 Gene

Genomics for NFIA-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NFIA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J061253 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.7 709 3.2 FEZF1 CEBPA MNT SMAD5 CEBPB ZNF513 ARNT ZNF395 ZNF639 MAX NFIA-AS1 HSALNG0004021 NFIA TM2D1
GH01J061256 Enhancer 0.3 dbSUPER 250.7 -1.6 -1623 1.1 ZNF362 ZNF777 NFIA-AS1 lnc-PATJ-6 NFIA TM2D1
GH01J061076 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.3 +173.0 173038 12.7 CHD2 TBP ZBTB10 SP1 MXD4 FEZF1 CEBPA MNT DEK IKZF1 NFIA HSALNG0004017 NFIA-AS1 NONHSAG001659.2 lnc-PATJ-2 TM2D1
GH01J061048 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11 +201.5 201523 9.6 TBP ZBTB10 MXD4 FEZF1 CEBPA MNT DEK IKZF1 SMAD5 IRF2 NFIA-AS1 NFIA HSALNG0004016 NFIA-AS2 Hsa-Mir-95-P3-v2_3p-001 TM2D1
GH01J061138 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.7 +113.8 113802 5.8 FEZF1 CEBPA DEK IKZF1 ZNF217 BRCA1 ZEB1 ZIC2 CEBPB ZNF395 NFIA-AS1 NFIA-AS2 TM2D1 lnc-PATJ-2 HSALNG0004019 NFIA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NFIA-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NFIA-AS1 Gene

Latest Assembly
chr1:61,247,716-61,255,303
(GRCh38/hg38)
Size:
7,588 bases
Orientation:
Minus strand

Previous Assembly
chr1:61,714,617-61,719,190
(GRCh37/hg19 by Entrez Gene)
Size:
4,574 bases
Orientation:
Minus strand

chr1:61,714,617-61,719,182
(GRCh37/hg19 by Ensembl)
Size:
4,566 bases
Orientation:
Minus strand

Genomic View for NFIA-AS1 Gene

Genes around NFIA-AS1 on UCSC Golden Path with GeneCards custom track
NFIA-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NFIA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NFIA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NFIA-AS1 Gene

Proteins for NFIA-AS1 Gene

Post-translational modifications for NFIA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NFIA-AS1 Gene

Domains & Families for NFIA-AS1 Gene

Gene Families for NFIA-AS1 Gene

genes like me logo Genes that share domains with NFIA-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NFIA-AS1 Gene

Function for NFIA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NFIA-AS1 Gene

Localization for NFIA-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NFIA-AS1 gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NFIA-AS1 Gene

Pathways & Interactions for NFIA-AS1 Gene

PathCards logo

SuperPathways for NFIA-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NFIA-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NFIA-AS1 Gene

Drugs & Compounds for NFIA-AS1 Gene

No Compound Related Data Available

Transcripts for NFIA-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NFIA-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004D56F2_9606 lncRNA 388 4

Ensembl: ENST00000442027 (view in UCSC) ,

LncBook: HSALNT0007925,

LNCipedia: NFIA-AS1:3,

NONCODE: NONHSAT003601.2,

URS00009ADF3E_9606 lncRNA 377 4

Ensembl: ENST00000626805 (view in UCSC) ,

LncBook: HSALNT0007928,

LNCipedia: NFIA-AS1:6,

NONCODE: NONHSAT151706.1,

URS0000782CD5_9606 lncRNA 245 4

Ensembl: ENST00000617929 (view in UCSC) ,

LncBook: HSALNT0007926,

LNCipedia: NFIA-AS1:7,

NONCODE: NONHSAT151705.1,

URS00009B9A57_9606 lncRNA 220 4

Ensembl: ENST00000630199 (view in UCSC) ,

LncBook: HSALNT0007933,

LNCipedia: NFIA-AS1:9,

NONCODE: NONHSAT151707.1,

URS00005AFF6C_9606 lncRNA 484 3

Ensembl: ENST00000596404 (view in UCSC) ,

LNCipedia: NFIA-AS1:4,

NONCODE: NONHSAT003603.2,

NFIA-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NFIA-AS1 Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NFIA-AS1 Gene

No ASD Table

Relevant External Links for NFIA-AS1 Gene

GeneLoc Exon Structure for
NFIA-AS1

Expression for NFIA-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NFIA-AS1 Gene

genes like me logo Genes that share expression patterns with NFIA-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NFIA-AS1 Gene

Orthologs for NFIA-AS1 Gene

Evolution for NFIA-AS1 Gene

ENSEMBL:
Gene Tree for NFIA-AS1 (if available)
TreeFam:
Gene Tree for NFIA-AS1 (if available)

No data available for Orthologs for NFIA-AS1 Gene

Paralogs for NFIA-AS1 Gene

No data available for Paralogs for NFIA-AS1 Gene

Variants for NFIA-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for NFIA-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for NFIA-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1010797 CNV gain 25217958
nsv1012657 CNV gain 25217958

Additional Variant Information for NFIA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NFIA-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NFIA-AS1 Gene

Disorders for NFIA-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for NFIA-AS1 Gene - From: LNC and COP

Disorder Aliases PubMed IDs
atherosclerosis susceptibility
  • aths
high grade glioma
  • glial cell tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for NFIA-AS1

genes like me logo Genes that share disorders with NFIA-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NFIA-AS1 Gene

Publications for NFIA-AS1 Gene

  1. Long non-coding RNA RP5-833A20.1 inhibits proliferation, metastasis and cell cycle progression by suppressing the expression of NFIA in U251 cells. (PMID: 27779670) Kang CM … Qiu YR (Molecular medicine reports 2016) 2 3 74
  2. RP5-833A20.1/miR-382-5p/NFIA-dependent signal transduction pathway contributes to the regulation of cholesterol homeostasis and inflammatory reaction. (PMID: 25265644) Hu YW … Wang Q (Arteriosclerosis, thrombosis, and vascular biology 2015) 2 3 74
  3. MicroRNA and LncRNA Expression Profiles in Human Estrogen Receptor Positive Breast Cancer. (PMID: 30775882) Shao X … Zheng Y (Clinical laboratory 2019) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for NFIA-AS1 Gene

Sources for NFIA-AS1 Gene