NFATC1 Gene (Protein Coding)

Nuclear Factor Of Activated T Cells 1

GC18P079395
GIFtS:
47
The product of this gene is a component of the nuclear factor of activated T cells DNA-binding transcription complex. This complex consists of at least two components: a preexisting cytosolic component that translocates to the nucleus upon T cell receptor (TCR) stimulation, and an inducible nuclear component. Proteins belonging to this family of transcription factors play a cen... See more...

Aliases for NFATC1 Gene

Aliases for NFATC1 Gene

  • Nuclear Factor Of Activated T Cells 1 2 3 5
  • NFAT2 2 3 4
  • NFATc 2 3 4
  • Nuclear Factor Of Activated T-Cells, Cytoplasmic, Calcineurin-Dependent 1 2 3
  • Nuclear Factor Of Activated T-Cells, Cytoplasmic 1 3 4
  • NFAT Transcription Complex Cytosolic Component 3 4
  • NF-ATC 2 3
  • Nuclear Factor Of Activated T-Cells 'C' 3
  • Nuclear Factor Of Activated T-Cells 1 2
  • NF-ATc1.2 3
  • NF-ATc1 4
  • NFATC1 5
  • NFATc1 4
  • NF-ATc 4
  • NFATC 4

External Ids for NFATC1 Gene

Previous GeneCards Identifiers for NFATC1 Gene

  • GC18M076683
  • GC18P077208
  • GC18P076890
  • GC18P075254
  • GC18P075256
  • GC18P073783
  • GC18P077155

Summaries for NFATC1 Gene

Entrez Gene Summary for NFATC1 Gene

  • The product of this gene is a component of the nuclear factor of activated T cells DNA-binding transcription complex. This complex consists of at least two components: a preexisting cytosolic component that translocates to the nucleus upon T cell receptor (TCR) stimulation, and an inducible nuclear component. Proteins belonging to this family of transcription factors play a central role in inducible gene transcription during immune response. The product of this gene is an inducible nuclear component. It functions as a major molecular target for the immunosuppressive drugs such as cyclosporin A. Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. Different isoforms of this protein may regulate inducible expression of different cytokine genes. [provided by RefSeq, Jul 2013]

GeneCards Summary for NFATC1 Gene

NFATC1 (Nuclear Factor Of Activated T Cells 1) is a Protein Coding gene. Diseases associated with NFATC1 include Cherubism and Osteonecrosis. Among its related pathways are Nur77 Signaling in T-Cell and Signal transduction_JNK pathway. Gene Ontology (GO) annotations related to this gene include DNA-binding transcription factor activity and transcription regulatory region DNA binding. An important paralog of this gene is NFATC2.

UniProtKB/Swiss-Prot Summary for NFATC1 Gene

  • Plays a role in the inducible expression of cytokine genes in T-cells, especially in the induction of the IL-2 or IL-4 gene transcription. Also controls gene expression in embryonic cardiac cells. Could regulate not only the activation and proliferation but also the differentiation and programmed death of T-lymphocytes as well as lymphoid and non-lymphoid cells (PubMed:10358178). Required for osteoclastogenesis and regulates many genes important for osteoclast differentiation and function (By similarity).

Tocris Summary for NFATC1 Gene

  • NFAT (Nuclear Factor of Activated T-Cells) proteins are transcription factors that are integral for the development and function of the immune system. Five NFAT isoforms have been identified to date, NFATC1-C4 and NFAT5.

Gene Wiki entry for NFATC1 Gene

Additional gene information for NFATC1 Gene

No data available for CIViC Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NFATC1 Gene

Genomics for NFATC1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for NFATC1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NFATC1 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for NFATC1

Top Transcription factor binding sites by QIAGEN in the NFATC1 gene promoter:
  • aMEF-2
  • FOXO4
  • GATA-3
  • MEF-2
  • MEF-2A

Genomic Locations for NFATC1 Gene

Genomic Locations for NFATC1 Gene
chr18:79,395,856-79,529,325
(GRCh38/hg38)
Size:
133,470 bases
Orientation:
Plus strand
chr18:77,155,772-77,289,325
(GRCh37/hg19)
Size:
133,554 bases
Orientation:
Plus strand

Genomic View for NFATC1 Gene

Genes around NFATC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NFATC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NFATC1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for NFATC1 Gene

Proteins for NFATC1 Gene

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  2. Protein
  3. Assay

  • Protein details for NFATC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95644-NFAC1_HUMAN
    Recommended name:
    Nuclear factor of activated T-cells, cytoplasmic 1
    Protein Accession:
    O95644
    Secondary Accessions:
    • B5B2M4
    • B5B2M5
    • B5B2M6
    • B5B2M7
    • B5B2M8
    • B5B2M9
    • B5B2N1
    • Q12865
    • Q15793
    • Q2M1S3

    Protein attributes for NFATC1 Gene

    Size:
    943 amino acids
    Molecular mass:
    101243 Da
    Quaternary structure:
    • Member of the multicomponent NFATC transcription complex that consists of at least two components, a pre-existing cytoplasmic component NFATC2 and an inducible nuclear component NFATC1. Other members such as NFATC4, NFATC3 or members of the activating protein-1 family, MAF, GATA4 and Cbp/p300 can also bind the complex. NFATC proteins bind to DNA as monomers (PubMed:9506523). Interacts with HOMER2 and HOMER3; this interaction may compete with calcineurin/PPP3CA-binding and hence prevent NFATC1 dephosphorylation and activation (PubMed:18218901).
    Miscellaneous:
    • [Isoform A-alpha']: Produced by alternative initiation at Met-37 of isoform A-alpha.

    Three dimensional structures from OCA and Proteopedia for NFATC1 Gene

    Alternative splice isoforms for NFATC1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NFATC1 Gene

Protein Expression for NFATC1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for NFATC1 Gene

  • Phosphorylated by NFATC-kinase and GSK3B; phosphorylation induces NFATC1 nuclear exit and dephosphorylation by calcineurin promotes nuclear import. Phosphorylation by PKA and DYRK2 negatively modulates nuclear accumulation, and promotes subsequent phosphorylation by GSK3B or casein kinase 1.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NFATC1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Abcam antibodies for NFATC1

No data available for DME Specific Peptides for NFATC1 Gene

Domains & Families for NFATC1 Gene

Gene Families for NFATC1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for NFATC1 Gene

InterPro:
Blocks:
  • Cell surface receptor IPT/TIG
  • Rel homology
  • Nuclear factor of activated T cells (NFAT) signature
ProtoNet:

Suggested Antigen Peptide Sequences for NFATC1 Gene

GenScript: Design optimal peptide antigens:
  • Nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1, isoform CRA_e (B5B2M4_HUMAN)
  • Nuclear factor of activated T-cells c1 isoform IB-IXL (B5B2M5_HUMAN)
  • Nuclear factor of activated T-cells c1 isoform IB-deltaIX (B5B2M7_HUMAN)
  • Nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1, isoform CRA_f (B5B2M8_HUMAN)
  • Nuclear factor of activated T-cells c1 isoform IB-IXS (B5B2M9_HUMAN)

Graphical View of Domain Structure for InterPro Entry

O95644

UniProtKB/Swiss-Prot:

NFAC1_HUMAN :
  • Rel Similarity Domain (RSD) allows DNA-binding and cooperative interactions with AP1 factors.
Domain:
  • Rel Similarity Domain (RSD) allows DNA-binding and cooperative interactions with AP1 factors.
  • The N-terminal transactivation domain (TAD-A) binds to and is activated by Cbp/p300. The dephosphorylated form contains two unmasked nuclear localization signals (NLS), which allow translocation of the protein to the nucleus.
  • Isoforms C have a C-terminal part with an additional trans-activation domain, TAD-B, which acts as a transcriptional activator. Isoforms B have a shorter C-terminal part without complete TAD-B which acts as a transcriptional repressor.
genes like me logo Genes that share domains with NFATC1: view

Function for NFATC1 Gene

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  2. CRISPR
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  6. Cell Line

Molecular function for NFATC1 Gene

UniProtKB/Swiss-Prot Function:
Plays a role in the inducible expression of cytokine genes in T-cells, especially in the induction of the IL-2 or IL-4 gene transcription. Also controls gene expression in embryonic cardiac cells. Could regulate not only the activation and proliferation but also the differentiation and programmed death of T-lymphocytes as well as lymphoid and non-lymphoid cells (PubMed:10358178). Required for osteoclastogenesis and regulates many genes important for osteoclast differentiation and function (By similarity).
UniProtKB/Swiss-Prot Induction:
Only isoforms A are inducibly expressed in T lymphocytes upon activation of the T-cell receptor (TCR) complex. Induced after co-addition of phorbol 12-myristate 13-acetate (PMA) and ionomycin. Also induced after co-addition of 12-O-tetradecanoylphorbol-13-acetate (TPA) and ionomycin. Weakly induced with PMA, ionomycin and cyclosporin A.
GENATLAS Biochemistry:
nuclear factor activated T cells,c1 (cytosolic) component,related to the NFKB/REL proteins and forming cooperative complexes with FOS and JUN on DNA,calcineurin dependent,involved in expression of genes collectively coordinating immune response

Phenotypes From GWAS Catalog for NFATC1 Gene

Gene Ontology (GO) - Molecular Function for NFATC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA --
GO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding ISS --
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific ISS --
GO:0001085 RNA polymerase II transcription factor binding ISS --
GO:0001225 RNA polymerase II transcription coactivator binding IEA --
genes like me logo Genes that share ontologies with NFATC1: view
genes like me logo Genes that share phenotypes with NFATC1: view

Animal Models for NFATC1 Gene

MGI Knock Outs for NFATC1:

Animal Model Products

CRISPR Products

Targeted motifs for NFATC1 Gene
HOMER Transcription Factor Regulatory Elements motif NFATC1
  • Consensus sequence: ATTTTCCATT Submotif: canonical Cell Type: Jurkat

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NFATC1

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology and Transcription Factor Targets for NFATC1 Gene

Localization for NFATC1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NFATC1 Gene

Cytoplasm. Nucleus. Note=Cytoplasmic for the phosphorylated form and nuclear after activation that is controlled by calcineurin-mediated dephosphorylation. Rapid nuclear exit of NFATC is thought to be one mechanism by which cells distinguish between sustained and transient calcium signals. The subcellular localization of NFATC plays a key role in the regulation of gene transcription (PubMed:16511445). Nuclear translocation of NFATC1 is enhanced in the presence of TNFSF11. Nuclear translocation is decreased in the presence of FBN1 which can bind and sequester TNFSF11 (By similarity). {ECO:0000250 UniProtKB:O88942, ECO:0000269 PubMed:16511445}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NFATC1 gene
Compartment Confidence
nucleus 5
cytosol 4
extracellular 3
plasma membrane 2
cytoskeleton 2
mitochondrion 2
endoplasmic reticulum 2
lysosome 2
peroxisome 1
endosome 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nuclear bodies (3)
  • Nucleoplasm (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for NFATC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000790 nuclear chromatin IDA,ISA --
GO:0005634 nucleus IDA 12370307
GO:0005654 nucleoplasm TAS --
GO:0005667 transcription factor complex IBA 21873635
GO:0005737 cytoplasm TAS,ISS --
genes like me logo Genes that share ontologies with NFATC1: view

Pathways & Interactions for NFATC1 Gene

PathCards logo

SuperPathways for NFATC1 Gene

SuperPathway Contained pathways
1 RANK Signaling in Osteoclasts
APRIL Pathway
.92
BAFF in B-Cell Signaling
.92
RANK Signaling in Osteoclasts
.45
Apoptosis and survival APRIL and BAFF signaling
.39
RANKL/RANK (Receptor activator of NFKB (ligand)) Signaling Pathway
.31
2 Activation of cAMP-Dependent PKA
Activation of cAMP-Dependent PKA
.77
cAMP Pathway
.77
Activation of PKA through GPCR
.71
PKA Signaling
.56
3 TCR Signaling (Qiagen)
PKC-Theta Pathway
.68
TCR Signaling
.68
ITK and TCR Signaling
.54
Fc-EpsilonRI Pathway
.49
4 Human cytomegalovirus infection
Human cytomegalovirus infection
.43
Human immunodeficiency virus 1 infection
.43
Kaposi sarcoma-associated herpesvirus infection
.42
5 Th17 cell differentiation
Th1 and Th2 cell differentiation
.55
Th17 cell differentiation
.55
Inflammatory bowel disease (IBD)
.37
genes like me logo Genes that share pathways with NFATC1: view

Pathways by source for NFATC1 Gene

1 PharmGKB pathway for NFATC1 Gene
7 GeneGo (Thomson Reuters) pathways for NFATC1 Gene
  • Apoptosis and survival APRIL and BAFF signaling
  • Development VEGF signaling via VEGFR2 - generic cascades
  • Immune response CD28 signaling
  • Immune response NFAT in immune response
  • Immune response T cell receptor signaling pathway
29 Qiagen pathways for NFATC1 Gene
  • Activation of cAMP-Dependent PKA
  • Activation of PKA through GPCR
  • APRIL Pathway
  • BAFF in B-Cell Signaling
  • cAMP Pathway
1 Cell Signaling Technology pathway for NFATC1 Gene
1 GeneTex pathway for NFATC1 Gene

SIGNOR curated interactions for NFATC1 Gene

Activates:
Is activated by:
Is inactivated by:

Gene Ontology (GO) - Biological Process for NFATC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001816 cytokine production IBA 21873635
GO:0003180 aortic valve morphogenesis ISS --
GO:0003184 pulmonary valve morphogenesis ISS --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006366 transcription by RNA polymerase II TAS 8702849
genes like me logo Genes that share ontologies with NFATC1: view

Drugs & Compounds for NFATC1 Gene

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(7) Drugs for NFATC1 Gene - From: DrugBank, ApexBio, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Pseudoephedrine Approved Pharma Target, inhibitor 426
Calcium Nutra 6556
NFAT Inhibitor Pharma NFAT inhibitor 0

(4) Additional Compounds for NFATC1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs

(1) ApexBio Compounds for NFATC1 Gene

Compound Action Cas Number
NFAT Inhibitor NFAT inhibitor 249537-73-3
genes like me logo Genes that share compounds with NFATC1: view

Drug Products

Transcripts for NFATC1 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for NFATC1 Gene

10 REFSEQ mRNAs :
27 NCBI additional mRNA sequence :
18 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NFATC1

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NFATC1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12
SP1: - -
SP2: - -
SP3: - - -
SP4:
SP5:

Relevant External Links for NFATC1 Gene

GeneLoc Exon Structure for
NFATC1

Expression for NFATC1 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NFATC1 Gene

mRNA expression in normal human tissues for NFATC1 Gene
mRNA expression by BioGPS for NFATC1 GenemRNA expression by GTEx for NFATC1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for NFATC1 Gene

This gene is overexpressed in Muscle - Skeletal (x4.3).

Protein differential expression in normal tissues from HIPED for NFATC1 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (51.5) and CD4 Tcells (7.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for NFATC1 Gene



Protein tissue co-expression partners for NFATC1 Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NFATC1

SOURCE GeneReport for Unigene cluster for NFATC1 Gene:

Hs.534074

mRNA Expression by UniProt/SwissProt for NFATC1 Gene:

O95644-NFAC1_HUMAN
Tissue specificity: Expressed in thymus, peripheral leukocytes as T-cells and spleen. Isoforms A are preferentially expressed in effector T-cells (thymus and peripheral leukocytes) whereas isoforms B and isoforms C are preferentially expressed in naive T-cells (spleen). Isoforms B are expressed in naive T-cells after first antigen exposure and isoforms A are expressed in effector T-cells after second antigen exposure. Isoforms IA are widely expressed but not detected in liver nor pancreas, neural expression is strongest in corpus callosum. Isoforms IB are expressed mostly in muscle, cerebellum, placenta and thymus, neural expression in fetal and adult brain, strongest in corpus callosum.

Evidence on tissue expression from TISSUES for NFATC1 Gene

  • Blood(4.7)
  • Nervous system(4.5)
  • Bone(3.3)
  • Muscle(3.1)
  • Bone marrow(3)
  • Lymph node(2.9)
  • Spleen(2.8)
  • Heart(2.8)
  • Intestine(2.5)
  • Skin(2.4)
  • Kidney(2.4)
  • Liver(2.2)
  • Lung(2.2)
  • Pancreas(2.1)
genes like me logo Genes that share expression patterns with NFATC1: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for NFATC1 Gene

Orthologs for NFATC1 Gene

This gene was present in the common ancestor of animals.

Orthologs for NFATC1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia NFATC1 30 31
  • 97.92 (n)
 OneToOne
Rat
(Rattus norvegicus)
 Mammalia Nfatc1 30
  • 82.39 (n)
Cow
(Bos Taurus)
 Mammalia NFATC1 30 31
  • 81.46 (n)
 OneToOne
Dog
(Canis familiaris)
 Mammalia NFATC1 30 31
  • 81.1 (n)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Nfatc1 30 17 31
  • 80.99 (n)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia NFATC1 31
  • 78 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia NFATC1 31
  • 68 (a)
 OneToOne
Chicken
(Gallus gallus)
 Aves NFATC1 30 31
  • 75.65 (n)
 OneToOne
Lizard
(Anolis carolinensis)
 Reptilia NFATC1 31
  • 77 (a)
 OneToOne
Tropical Clawed Frog
(Silurana tropicalis)
 Amphibia nfatc1 30
  • 67.77 (n)
Zebrafish
(Danio rerio)
 Actinopterygii nfatc1 30 31
  • 64.31 (n)
 OneToOne
Fruit Fly
(Drosophila melanogaster)
 Insecta NFAT 31
  • 12 (a)
 OneToMany
Species where no ortholog for NFATC1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for NFATC1 Gene

ENSEMBL:
Gene Tree for NFATC1 (if available)
TreeFam:
Gene Tree for NFATC1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for NFATC1: view image

Paralogs for NFATC1 Gene

Paralogs for NFATC1 Gene

(3) SIMAP similar genes for NFATC1 Gene using alignment to 5 proteins:

  • NFAC1_HUMAN
  • F5H4S8_HUMAN
  • K7EQ04_HUMAN
  • K7ER53_HUMAN
  • L8ECN7_HUMAN
genes like me logo Genes that share paralogs with NFATC1: view

Variants for NFATC1 Gene

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Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for NFATC1 Gene

SNP ID Clinical significance and condition Chr 18 pos Variation AA Info Type
707967 Benign: not provided 79,411,331(+) C/T SYNONYMOUS_VARIANT,INTRON_VARIANT
710479 Likely Benign: not provided 79,411,164(+) G/A MISSENSE_VARIANT,INTRON_VARIANT
712224 Benign: not provided 79,396,328(+) G/A MISSENSE_VARIANT,FIVE_PRIME_UTR_VARIANT
712225 Benign: not provided 79,396,329(+) C/T SYNONYMOUS_VARIANT,FIVE_PRIME_UTR_VARIANT
715539 Likely Benign: not provided 79,411,465(+) C/T MISSENSE_VARIANT,INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for NFATC1 Gene

Structural Variations from Database of Genomic Variants (DGV) for NFATC1 Gene

Variant ID Type Subtype PubMed ID
dgv1658n106 CNV deletion 24896259
dgv1950e59 CNV duplication 20981092
dgv6113n54 CNV loss 21841781
esv1006618 CNV deletion 20482838
esv1043802 CNV deletion 17803354
esv1062567 CNV insertion 17803354
esv1593083 CNV deletion 17803354
esv1785248 CNV deletion 17803354
esv1967866 CNV deletion 18987734
esv2012703 CNV deletion 18987734
esv2047377 CNV deletion 18987734
esv2174956 CNV deletion 18987734
esv2413184 CNV deletion 18987734
esv25051 CNV loss 19812545
esv2651032 CNV deletion 19546169
esv2659344 CNV deletion 23128226
esv2660625 CNV deletion 23128226
esv2663959 CNV deletion 23128226
esv2667838 CNV deletion 23128226
esv2717497 CNV deletion 23290073
esv2717644 CNV deletion 23290073
esv2717645 CNV deletion 23290073
esv2717646 CNV deletion 23290073
esv2717647 CNV deletion 23290073
esv2717648 CNV deletion 23290073
esv2717649 CNV deletion 23290073
esv2717650 CNV deletion 23290073
esv2717652 CNV deletion 23290073
esv2717653 CNV deletion 23290073
esv2717654 CNV deletion 23290073
esv2760476 CNV gain+loss 21179565
esv28648 CNV loss 19812545
esv29064 CNV gain 19812545
esv3412775 CNV duplication 20981092
esv3555778 CNV deletion 23714750
esv3643294 CNV loss 21293372
esv3643295 CNV gain 21293372
esv3643303 CNV loss 21293372
esv3643304 CNV loss 21293372
esv3900 CNV loss 18987735
nsv1065064 CNV gain 25217958
nsv1065902 CNV gain 25217958
nsv1071875 CNV deletion 25765185
nsv1071876 CNV deletion 25765185
nsv1072282 CNV deletion 25765185
nsv1072283 CNV deletion 25765185
nsv1113948 CNV deletion 24896259
nsv1141945 CNV deletion 24896259
nsv1143888 CNV deletion 24896259
nsv1144842 CNV deletion 24896259
nsv1149044 CNV deletion 26484159
nsv130687 CNV deletion 16902084
nsv131042 CNV deletion 16902084
nsv131115 CNV deletion 16902084
nsv131868 CNV deletion 16902084
nsv2380 CNV insertion 18451855
nsv428359 CNV gain 18775914
nsv458315 CNV loss 19166990
nsv509706 CNV insertion 20534489
nsv509707 CNV insertion 20534489
nsv518913 CNV loss 19592680
nsv522375 CNV loss 19592680
nsv522642 CNV loss 19592680
nsv523985 CNV loss 19592680
nsv525694 CNV loss 19592680
nsv577794 CNV gain 21841781
nsv577873 CNV gain 21841781
nsv577874 CNV loss 21841781
nsv577875 CNV loss 21841781
nsv577877 CNV loss 21841781
nsv577878 CNV loss 21841781
nsv577879 CNV gain 21841781
nsv577880 CNV loss 21841781
nsv577881 CNV gain 21841781
nsv577882 CNV loss 21841781
nsv577885 CNV loss 21841781
nsv577886 CNV loss 21841781
nsv828344 CNV gain 20364138
nsv828345 CNV loss 20364138
nsv833701 CNV loss 17160897
nsv953569 CNV deletion 24416366
nsv954088 CNV deletion 24416366

Variation tolerance for NFATC1 Gene

Residual Variation Intolerance Score: 52% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.01; 84.17% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for NFATC1 Gene

Human Gene Mutation Database (HGMD)
NFATC1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
NFATC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NFATC1 Gene

Disorders for NFATC1 Gene

MalaCards: The human disease database

(25) MalaCards diseases for NFATC1 Gene - From: DISEASES, Novoseek, and GeneCards

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for NFATC1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with NFATC1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NFATC1 Gene

Publications for NFATC1 Gene

  1. Alternative splicing and expression of human and mouse NFAT genes. (PMID: 18675896) Vihma H … Timmusk T (Genomics 2008) 3 4 23
  2. Protein kinase A negatively modulates the nuclear accumulation of NF-ATc1 by priming for subsequent phosphorylation by glycogen synthase kinase-3. (PMID: 12351631) Sheridan CM … Gardner P (The Journal of biological chemistry 2002) 3 4 23
  3. Identification of amino acid residues and protein kinases involved in the regulation of NFATc subcellular localization. (PMID: 10652349) Porter CM … Clipstone NA (The Journal of biological chemistry 2000) 3 4 23
  4. Multiple NF-ATc isoforms with individual transcriptional properties are synthesized in T lymphocytes. (PMID: 10358178) Chuvpilo S … Serfling E (Journal of immunology (Baltimore, Md. : 1950) 1999) 3 4 23
  5. NF-AT components define a family of transcription factors targeted in T-cell activation. (PMID: 8202141) Northrop JP … Crabtree GR (Nature 1994) 2 3 4

ExternalLinks

View latest publications for NFATC1 gene in Mastermind

Products for NFATC1 Gene

Sources for NFATC1 Gene