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NEGR1-IT1 (NEGR1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH01J071834 | Enhancer | 0.4 | Ensembl | 600.7 | +1.9 | 1912 | 1 | NFIC NFIB GATA2 SPI1 | NEGR1-IT1 piR-32470-003 NEGR1 ZRANB2 | |
GH01J071836 | Enhancer | 0.2 | Ensembl | 600.7 | -0.2 | -188 | 1.2 | NEGR1-IT1 piR-46002-027 NEGR1 ZRANB2 | ||
GH01J071860 | Enhancer | 0.5 | Ensembl | 0.4 | -24.2 | -24188 | 0.8 | JUND CEBPB FOS JUN CREB1 | NEGR1-IT1 piR-46002-027 NEGR1 ZRANB2 | |
GH01J071881 | Enhancer | 0.6 | Ensembl ENCODE | 0.3 | -45.1 | -45088 | 2.2 | POLR2A SPI1 MAX | piR-46002-027 NEGR1-IT1 NEGR1 ZRANB2 | |
GH01J071828 | Enhancer | 0.3 | Ensembl | 0.4 | +8.2 | 8212 | 0.8 | POLR2A | NEGR1-IT1 piR-32470-003 NEGR1 ZRANB2 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS0000264AAF_9606 | lncRNA | 534 | 4 |
Ensembl: ENST00000453121 (view in UCSC) , LncBook: HSALNT0008850, LNCipedia: NEGR1-IT1:1, NONCODE: NONHSAT003909.2, |
URS000075C659_9606 | lncRNA | 534 | 2 |
HGNC: 41432, RefSeq: NR_046218, |
URS00009BEFB0_9606 | lncRNA | 534 | 2 |
LncBook: HSALNT0008851, NONCODE: NONHSAT151775.1, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv2762150 | CNV | loss | 21179565 |
esv3893668 | CNV | loss | 25118596 |
nsv1008210 | CNV | loss | 25217958 |
nsv830181 | CNV | gain | 17160897 |
No disorders were found for NEGR1-IT1 Gene.