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Aliases for NEGR1-IT1 Gene

Subcategory (RNA class) for NEGR1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NEGR1-IT1 Gene

  • NEGR1 Intronic Transcript 1 2 3 5
  • NEGR1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for NEGR1-IT1 Gene

Previous GeneCards Identifiers for NEGR1-IT1 Gene

  • GC01M072260

Summaries for NEGR1-IT1 Gene

GeneCards Summary for NEGR1-IT1 Gene

NEGR1-IT1 (NEGR1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NEGR1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NEGR1-IT1 Gene

Genomics for NEGR1-IT1 Gene

GeneHancer (GH) Regulatory Elements for NEGR1-IT1 Gene

Promoters and enhancers for NEGR1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I071881 Enhancer 0.4 ENCODE 0.2 -45.2 -45176 1.4 POLR2A MAX GC01M071897 NEGR1-IT1 NEGR1
GH01I071868 Enhancer 0.2 FANTOM5 0.3 -31.5 -31511 0.2 GC01M071897 NEGR1-IT1 NEGR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NEGR1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NEGR1-IT1 Gene

Genomic Locations for NEGR1-IT1 Gene
chr1:71,794,232-71,837,012
(GRCh38/hg38)
Size:
42,781 bases
Orientation:
Minus strand
chr1:72,259,915-72,302,695
(GRCh37/hg19)

Genomic View for NEGR1-IT1 Gene

Genes around NEGR1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NEGR1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NEGR1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NEGR1-IT1 Gene

Proteins for NEGR1-IT1 Gene

Post-translational modifications for NEGR1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NEGR1-IT1 Gene

Domains & Families for NEGR1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NEGR1-IT1 Gene

Function for NEGR1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NEGR1-IT1 Gene

Localization for NEGR1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NEGR1-IT1 Gene

Pathways & Interactions for NEGR1-IT1 Gene

SuperPathways for NEGR1-IT1 Gene

No Data Available

Interacting Proteins for NEGR1-IT1 Gene

Gene Ontology (GO) - Biological Process for NEGR1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NEGR1-IT1 Gene

Drugs & Compounds for NEGR1-IT1 Gene

No Compound Related Data Available

Transcripts for NEGR1-IT1 Gene

mRNA/cDNA for NEGR1-IT1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NEGR1-IT1 Gene

NEGR1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NEGR1-IT1 Gene

No ASD Table

Relevant External Links for NEGR1-IT1 Gene

GeneLoc Exon Structure for
NEGR1-IT1
ECgene alternative splicing isoforms for
NEGR1-IT1

Expression for NEGR1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NEGR1-IT1 Gene

SOURCE GeneReport for Unigene cluster for NEGR1-IT1 Gene:

Hs.681780
genes like me logo Genes that share expression patterns with NEGR1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NEGR1-IT1 Gene

Orthologs for NEGR1-IT1 Gene

Evolution for NEGR1-IT1 Gene

ENSEMBL:
Gene Tree for NEGR1-IT1 (if available)
TreeFam:
Gene Tree for NEGR1-IT1 (if available)

No data available for Orthologs for NEGR1-IT1 Gene

Paralogs for NEGR1-IT1 Gene

No data available for Paralogs for NEGR1-IT1 Gene

Variants for NEGR1-IT1 Gene

Sequence variations from dbSNP and Humsavar for NEGR1-IT1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000095219 -- 71,831,446(-) T/C intron_variant
rs1000162622 -- 71,819,685(-) T/C intron_variant
rs1000266283 -- 71,837,855(-) A/C upstream_transcript_variant
rs1000270557 -- 71,822,475(-) G/A intron_variant
rs1000443975 -- 71,810,492(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NEGR1-IT1 Gene

Variant ID Type Subtype PubMed ID
esv2762150 CNV loss 21179565
esv3893668 CNV loss 25118596
nsv1008210 CNV loss 25217958
nsv830181 CNV gain 17160897

Additional Variant Information for NEGR1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NEGR1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NEGR1-IT1 Gene

Disorders for NEGR1-IT1 Gene

Additional Disease Information for NEGR1-IT1

No disorders were found for NEGR1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NEGR1-IT1 Gene

Publications for NEGR1-IT1 Gene

  1. Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX. (PMID: 18204098) Hom G … Behrens TW (The New England journal of medicine 2008) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for NEGR1-IT1 Gene

Sources for NEGR1-IT1 Gene

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