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Aliases for NECTIN1-AS1 Gene

Subcategory (RNA class) for NECTIN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for NECTIN1-AS1 Gene

  • NECTIN1 Antisense RNA 1 2 3
  • Novel Transcript 5
  • CTD-2523D13.1 3
  • AP003390.2 5

External Ids for NECTIN1-AS1 Gene

Summaries for NECTIN1-AS1 Gene

GeneCards Summary for NECTIN1-AS1 Gene

NECTIN1-AS1 (NECTIN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NECTIN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NECTIN1-AS1 Gene

Genomics for NECTIN1-AS1 Gene

GeneHancer (GH) Regulatory Elements for NECTIN1-AS1 Gene

Promoters and enhancers for NECTIN1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J119709 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 600.7 -0.1 -65 1.1 MLLT1 RFX1 ZNF143 POLR2A BMI1 RUNX3 ZNF189 RCOR1 NECTIN1-AS1 NECTIN1 RNU6-1123P
GH11J119666 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.1 -42.9 -42942 1.2 ZNF652 CC2D1A CTCF SP5 RAD21 RXRA ARID2 GATAD2A ZNF143 REST NECTIN1-AS1 RNU6-1123P NECTIN1
GH11J119663 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.1 -45.9 -45851 1.6 SP1 PPARG SP5 KAT8 SOX13 GATAD2A RXRB TGIF2 FOXA2 SAP130 NECTIN1-AS1 RNU6-1123P NECTIN1
GH11J120096 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.4 +387.1 387149 3.6 SP7 PKNOX1 IKZF1 ZBTB8A ZNF600 ZIC2 ZNF316 SCRT2 EGR1 OSR2 ENSG00000255216 RNU6-1123P NECTIN1-AS1 TRIM29 LOC105378956 LOC105369527
GH11J120089 Enhancer 0.7 FANTOM5 ENCODE dbSUPER 10.4 +379.8 379802 0.3 ENSG00000255216 RNU6-1123P NECTIN1-AS1 LOC105378956 LOC105369527
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NECTIN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NECTIN1-AS1 Gene

Genomic Locations for NECTIN1-AS1 Gene
chr11:119,709,852-119,720,455
(GRCh38/hg38)
Size:
10,604 bases
Orientation:
Plus strand
chr11:119,580,630-119,584,635
(GRCh37/hg19)
Size:
4,006 bases
Orientation:
Plus strand

Genomic View for NECTIN1-AS1 Gene

Genes around NECTIN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NECTIN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NECTIN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NECTIN1-AS1 Gene

Proteins for NECTIN1-AS1 Gene

Post-translational modifications for NECTIN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NECTIN1-AS1 Gene

Domains & Families for NECTIN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NECTIN1-AS1 Gene

Function for NECTIN1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NECTIN1-AS1 Gene

Localization for NECTIN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NECTIN1-AS1 Gene

Pathways & Interactions for NECTIN1-AS1 Gene

PathCards logo

SuperPathways for NECTIN1-AS1 Gene

No Data Available

Interacting Proteins for NECTIN1-AS1 Gene

Gene Ontology (GO) - Biological Process for NECTIN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NECTIN1-AS1 Gene

Drugs & Compounds for NECTIN1-AS1 Gene

No Compound Related Data Available

Transcripts for NECTIN1-AS1 Gene

mRNA/cDNA for NECTIN1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for NECTIN1-AS1 Gene

No ASD Table

Relevant External Links for NECTIN1-AS1 Gene

GeneLoc Exon Structure for
NECTIN1-AS1
ECgene alternative splicing isoforms for
NECTIN1-AS1

Expression for NECTIN1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NECTIN1-AS1 Gene

Orthologs for NECTIN1-AS1 Gene

Evolution for NECTIN1-AS1 Gene

ENSEMBL:
Gene Tree for NECTIN1-AS1 (if available)
TreeFam:
Gene Tree for NECTIN1-AS1 (if available)

No data available for Orthologs for NECTIN1-AS1 Gene

Paralogs for NECTIN1-AS1 Gene

No data available for Paralogs for NECTIN1-AS1 Gene

Variants for NECTIN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for NECTIN1-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000059429 -- 119,709,764(+) G/A/T upstream_transcript_variant
rs1000266279 -- 119,714,034(+) T/C non_coding_transcript_variant
rs1000866761 -- 119,715,375(+) G/T non_coding_transcript_variant
rs1000914098 -- 119,714,267(+) T/C non_coding_transcript_variant
rs1001065667 -- 119,708,487(+) C/G upstream_transcript_variant

Additional Variant Information for NECTIN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NECTIN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NECTIN1-AS1 Gene

Disorders for NECTIN1-AS1 Gene

No disorders were found for NECTIN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NECTIN1-AS1 Gene

Publications for NECTIN1-AS1 Gene

No publications were found for NECTIN1-AS1 Gene.

No data available for External Links for NECTIN1-AS1 Gene

Products for NECTIN1-AS1 Gene

Sources for NECTIN1-AS1 Gene

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