Aliases for NDUFV1-DT Gene

RNA type for NDUFV1-DT Gene

lncRNA

Aliases for NDUFV1-DT Gene

External Ids for NDUFV1-DT Gene

Previous HGNC Symbols for NDUFV1-DT Gene

  • C11orf72

Summaries for NDUFV1-DT Gene

GeneCards Summary for NDUFV1-DT Gene

NDUFV1-DT (NDUFV1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NDUFV1-DT Gene

Genomics for NDUFV1-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NDUFV1-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NDUFV1-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NDUFV1-DT Gene

Latest Assembly
chr11:67,602,879-67,606,706
(GRCh38/hg38)
Size:
3,828 bases
Orientation:
Minus strand

Previous Assembly
chr11:67,370,351-67,374,177
(GRCh37/hg19 by Entrez Gene)
Size:
3,827 bases
Orientation:
Minus strand

chr11:67,370,351-67,374,177
(GRCh37/hg19 by Ensembl)
Size:
3,827 bases
Orientation:
Minus strand

Genomic View for NDUFV1-DT Gene

Genes around NDUFV1-DT on UCSC Golden Path with GeneCards custom track
NDUFV1-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NDUFV1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NDUFV1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NDUFV1-DT Gene

Proteins for NDUFV1-DT Gene

  • Protein details for NDUFV1-DT Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NBR9-CK072_HUMAN
    Recommended name:
    Uncharacterized protein C11orf72
    Protein Accession:
    Q8NBR9

    Protein attributes for NDUFV1-DT Gene

    Size:
    251 amino acids
    Molecular mass:
    27887 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NDUFV1-DT Gene

Post-translational modifications for NDUFV1-DT Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for NDUFV1-DT Gene

Domains & Families for NDUFV1-DT Gene

Gene Families for NDUFV1-DT Gene

genes like me logo Genes that share domains with NDUFV1-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NDUFV1-DT Gene

Function for NDUFV1-DT Gene

Phenotypes From GWAS Catalog for NDUFV1-DT Gene

genes like me logo Genes that share phenotypes with NDUFV1-DT: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NDUFV1-DT Gene

Localization for NDUFV1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NDUFV1-DT Gene

Pathways & Interactions for NDUFV1-DT Gene

PathCards logo

SuperPathways for NDUFV1-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for NDUFV1-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NDUFV1-DT Gene

Drugs & Compounds for NDUFV1-DT Gene

No Compound Related Data Available

Transcripts for NDUFV1-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NDUFV1-DT Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00007C9E84_9606 lncRNA 2434 3

RefSeq: NR_130935,

Ensembl: ENST00000333139 (view in UCSC) ,

LNCipedia: lnc-NUDT8-3:1,

URS00007CBD84_9606 lncRNA 1128 2

Ensembl: ENST00000446232 (view in UCSC) ,

LNCipedia: lnc-NUDT8-3:2,

NDUFV1-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NDUFV1-DT Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NDUFV1-DT Gene

No ASD Table

Relevant External Links for NDUFV1-DT Gene

GeneLoc Exon Structure for
NDUFV1-DT

Expression for NDUFV1-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NDUFV1-DT

SOURCE GeneReport for Unigene cluster for NDUFV1-DT Gene:

Hs.382074
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NDUFV1-DT Gene

Orthologs for NDUFV1-DT Gene

Evolution for NDUFV1-DT Gene

ENSEMBL:
Gene Tree for NDUFV1-DT (if available)
TreeFam:
Gene Tree for NDUFV1-DT (if available)
Alliance of Genome Resources:
Additional Orthologs for NDUFV1-DT

No data available for Orthologs for NDUFV1-DT Gene

Paralogs for NDUFV1-DT Gene

No data available for Paralogs for NDUFV1-DT Gene

Variants for NDUFV1-DT Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for NDUFV1-DT Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
rs2514013 Benign: not provided 67,606,685(-) A/G
NC_000011.10:g.67606685A>G
NON_CODING_TRANSCRIPT
rs12421329 -- p.Pro22Thr

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for NDUFV1-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Variation tolerance for NDUFV1-DT Gene

Gene Damage Index Score: 5.31; 70.57% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for NDUFV1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NDUFV1-DT
Leiden Open Variation Database (LOVD)
NDUFV1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NDUFV1-DT Gene

Disorders for NDUFV1-DT Gene

Additional Disease Information for NDUFV1-DT

No disorders were found for NDUFV1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NDUFV1-DT Gene

Publications for NDUFV1-DT Gene

  1. [Experimental analysis of human specific protein coding open reading frame c11orf72]. (PMID: 23964515) Baskaev KK … Buzdin AA (Bioorganicheskaia khimiia 2013) 2 3
  2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor TD … Sakaki Y (Nature 2006) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  5. A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene. (PMID: 19490893) Luo J … Elledge SJ (Cell 2009) 3

No data available for Mastermind for NDUFV1-DT Gene

Products for NDUFV1-DT Gene

Sources for NDUFV1-DT Gene