Free for academic non-profit institutions. Other users need a Commercial license

NDUFB1 Gene(Protein Coding)

NADH:Ubiquinone Oxidoreductase Subunit B1

GCID:
GC14M092116
GIFtS:
44
Genes Participants
UDN Logo

Aliases for NDUFB1 Gene

Aliases for NDUFB1 Gene

  • NADH:Ubiquinone Oxidoreductase Subunit B1 2 3 5
  • NADH Dehydrogenase (Ubiquinone) 1 Beta Subcomplex, 1, 7kDa 2 3
  • NADH-Ubiquinone Oxidoreductase MNLL Subunit 3 4
  • Complex I MNLL Subunit 2 3
  • Complex I-MNLL 3 4
  • CI-MNLL 3 4
  • NADH Dehydrogenase (Ubiquinone) 1 Beta Subcomplex, 1 (7kD, MNLL) 2
  • NADH Dehydrogenase [Ubiquinone] 1 Beta Subcomplex Subunit 1 3
  • CI-SGDH 3
  • MNLL 3

External Ids for NDUFB1 Gene

Previous GeneCards Identifiers for NDUFB1 Gene

  • GC14M090088
  • GC14M086398
  • GC14M090572
  • GC14M091652
  • GC14M092582
  • GC14M072763

Summaries for NDUFB1 Gene

GeneCards Summary for NDUFB1 Gene

NDUFB1 (NADH:Ubiquinone Oxidoreductase Subunit B1) is a Protein Coding gene. Among its related pathways are Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. and Metabolism. Gene Ontology (GO) annotations related to this gene include NADH dehydrogenase (ubiquinone) activity and NADH dehydrogenase activity.

UniProtKB/Swiss-Prot for NDUFB1 Gene

  • Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gene Wiki entry for NDUFB1 Gene

Additional gene information for NDUFB1 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NDUFB1 Gene

Genomics for NDUFB1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for NDUFB1 Gene

Promoters and enhancers for NDUFB1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH14I092120 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 576 -0.2 -165 3 PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B CPSF2 NDUFB1 ATXN3 PPP4R3A TRIP11 GC14P092168
GH14I092105 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 10.5 +15.7 15726 2.2 HDGF PKNOX1 CLOCK FOXA2 ARID4B SIN3A DMAP1 ZBTB7B POLR2B ZNF143 ATXN3 PPP4R3A CPSF2 NDUFB1 TRIP11 RIN3 SLC24A4 CATSPERB
GH14I092675 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.5 -554.8 -554773 2.9 HDGF PKNOX1 SMAD1 RB1 BMI1 YBX1 BATF KLF5 IRF4 ZNF366 NDUFB1 CPSF2 GC14P092700 PIR35810 RIN3 GC14P092353
GH14I092038 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 5.1 +82.1 82062 3.3 HDGF PKNOX1 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B TRIP11 PIR36842 PPP4R3A ATXN3 CPSF2 GOLGA5 TC2N CATSPERB NDUFB1 GC14P091891
GH14I092160 Enhancer 0.4 ENCODE 25.5 -39.0 -38955 1.2 RXRA CEBPB FOS NDUFB1 CPSF2 ATXN3 GC14P092168
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NDUFB1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the NDUFB1 gene promoter:

Genomic Locations for NDUFB1 Gene

Genomic Locations for NDUFB1 Gene
chr14:92,116,122-92,121,917
(GRCh38/hg38)
Size:
5,796 bases
Orientation:
Minus strand
chr14:92,582,466-92,588,261
(GRCh37/hg19)

Genomic View for NDUFB1 Gene

Genes around NDUFB1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NDUFB1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NDUFB1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for NDUFB1 Gene

Proteins for NDUFB1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for NDUFB1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O75438-NDUB1_HUMAN
    Recommended name:
    NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
    Protein Accession:
    O75438
    Secondary Accessions:
    • A0AV68

    Protein attributes for NDUFB1 Gene

    Size:
    58 amino acids
    Molecular mass:
    6961 Da
    Quaternary structure:
    • Complex I is composed of 45 different subunits.
    SequenceCaution:
    • Sequence=AAD42054.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for NDUFB1 Gene

    Alternative splice isoforms for NDUFB1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NDUFB1 Gene

Protein Expression for NDUFB1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for NDUFB1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NDUFB1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NDUFB1 Gene

Domains & Families for NDUFB1 Gene

Gene Families for NDUFB1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for NDUFB1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for NDUFB1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O75438

UniProtKB/Swiss-Prot:

NDUB1_HUMAN :
  • Belongs to the complex I NDUFB1 subunit family.
Family:
  • Belongs to the complex I NDUFB1 subunit family.
genes like me logo Genes that share domains with NDUFB1: view

Function for NDUFB1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for NDUFB1 Gene

GENATLAS Biochemistry:
NADH ubiquinone oxidoreductase (Q reductase),7kDa,component beta 1,hydrophobic fraction of the complex I multi-subunit enzyme of the oxidative phosphorylation (OXPHOS),inner mitochondrial membrane
UniProtKB/Swiss-Prot Function:
Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gene Ontology (GO) - Molecular Function for NDUFB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008137 NADH dehydrogenase (ubiquinone) activity NAS,TAS 9878551
genes like me logo Genes that share ontologies with NDUFB1: view
genes like me logo Genes that share phenotypes with NDUFB1: view

Animal Model Products

miRNA for NDUFB1 Gene

miRTarBase miRNAs that target NDUFB1

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NDUFB1 Gene

Localization for NDUFB1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NDUFB1 Gene

Mitochondrion inner membrane; Single-pass membrane protein; Matrix side.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NDUFB1 gene
Compartment Confidence
extracellular 5
mitochondrion 5
nucleus 4
plasma membrane 1
endoplasmic reticulum 1
cytosol 1
lysosome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Mitochondria (3)
  • Nuclear speckles (1)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for NDUFB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IDA,IEA --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005747 mitochondrial respiratory chain complex I NAS 9878551
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with NDUFB1: view

Pathways & Interactions for NDUFB1 Gene

genes like me logo Genes that share pathways with NDUFB1: view

Gene Ontology (GO) - Biological Process for NDUFB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006120 mitochondrial electron transport, NADH to ubiquinone TAS --
GO:0032981 mitochondrial respiratory chain complex I assembly TAS --
GO:0055114 oxidation-reduction process IEA --
genes like me logo Genes that share ontologies with NDUFB1: view

No data available for SIGNOR curated interactions for NDUFB1 Gene

Drugs & Compounds for NDUFB1 Gene

Products:

  1. Drug

(5) Drugs for NDUFB1 Gene - From: DrugBank and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
NADH Approved Nutra Target 0
FAD Approved Pharma 0
Ubiquinone-1 Experimental Pharma 0
Ubiquinone-2 Experimental Pharma 0
NAD Pharma Full agonist, Agonist 0

(3) Additional Compounds for NDUFB1 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Fe2+
  • Armco iron
  • Carbonyl iron
  • FE
  • Ferrovac e
  • Hematite
 15438-31-0
QH2
  • Coenzymes QH2
  • CoQH2
  • Reduced ubiquinone
  • Ubiquinol
  • Ubiquinone-1
 56275-39-9
Sulfide
  • Sulfanediide
  • Sulfide
  • Sulfur
  • Sulphide
 18496-25-8
genes like me logo Genes that share compounds with NDUFB1: view

Transcripts for NDUFB1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for NDUFB1 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(118) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NDUFB1 Gene

NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NDUFB1 Gene

No ASD Table

Relevant External Links for NDUFB1 Gene

GeneLoc Exon Structure for
NDUFB1
ECgene alternative splicing isoforms for
NDUFB1

Expression for NDUFB1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NDUFB1 Gene

mRNA expression in normal human tissues for NDUFB1 Gene
mRNA expression by BioGPS for NDUFB1 GenemRNA expression by GTEx for NDUFB1 Gene

Protein differential expression in normal tissues from HIPED for NDUFB1 Gene

This gene is overexpressed in Heart (13.4) and Peripheral blood mononuclear cells (10.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NDUFB1 Gene



Protein tissue co-expression partners for NDUFB1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of NDUFB1 Gene:

NDUFB1

SOURCE GeneReport for Unigene cluster for NDUFB1 Gene:

Hs.183435

Evidence on tissue expression from TISSUES for NDUFB1 Gene

  • Nervous system(4.4)
  • Blood(4.3)
  • Pancreas(4.3)
  • Heart(2.4)
  • Muscle(2.4)
  • Kidney(2.2)
  • Liver(2.2)
  • Adrenal gland(2.1)
  • Stomach(2)
genes like me logo Genes that share expression patterns with NDUFB1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for NDUFB1 Gene

Orthologs for NDUFB1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for NDUFB1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia NDUFB1 33 34
  • 99.68 (n)
cow
(Bos Taurus)
 Mammalia NDUFB1 33 34
  • 89.66 (n)
mouse
(Mus musculus)
 Mammalia LOC102631912 33
  • 83.04 (n)
Ndufb1-ps 16
dog
(Canis familiaris)
 Mammalia LOC102156783 33
  • 80.18 (n)
oppossum
(Monodelphis domestica)
 Mammalia NDUFB1 34
  • 79 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia NDUFB1 34
  • 20 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves NDUFB1 33 34
  • 70.11 (n)
lizard
(Anolis carolinensis)
 Reptilia NDUFB1 34
  • 62 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia Str.3020 33
African clawed frog
(Xenopus laevis)
 Amphibia Xl.6643 33
zebrafish
(Danio rerio)
 Actinopterygii NDUFB1 34
  • 64 (a)
 OneToOne
Species where no ortholog for NDUFB1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NDUFB1 Gene

ENSEMBL:
Gene Tree for NDUFB1 (if available)
TreeFam:
Gene Tree for NDUFB1 (if available)

Paralogs for NDUFB1 Gene

Pseudogenes.org Pseudogenes for NDUFB1 Gene

genes like me logo Genes that share paralogs with NDUFB1: view

No data available for Paralogs for NDUFB1 Gene

Variants for NDUFB1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for NDUFB1 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000066590 -- 92,122,001(-) C/G upstream_transcript_variant
rs1001472705 -- 92,121,377(-) C/G intron_variant
rs1001524836 -- 92,121,682(-) A/C coding_sequence_variant, synonymous_variant
rs1001573905 -- 92,117,459(-) A/G intron_variant
rs1001686258 -- 92,123,099(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NDUFB1 Gene

Variant ID Type Subtype PubMed ID
nsv819246 CNV loss 19587683

Variation tolerance for NDUFB1 Gene

Residual Variation Intolerance Score: 56.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.38; 8.44% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for NDUFB1 Gene

Human Gene Mutation Database (HGMD)
NDUFB1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
NDUFB1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NDUFB1 Gene

Disorders for NDUFB1 Gene

Additional Disease Information for NDUFB1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for NDUFB1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NDUFB1 Gene

Publications for NDUFB1 Gene

  1. Accessory subunits are integral for assembly and function of human mitochondrial complex I. (PMID: 27626371) Stroud DA … Ryan MT (Nature 2016) 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. The subunit composition of the human NADH dehydrogenase obtained by rapid one-step immunopurification. (PMID: 12611891) Murray J … Capaldi RA (The Journal of biological chemistry 2003) 3 4 58
  5. Intron based radiation hybrid mapping of 15 complex I genes of the human electron transport chain. (PMID: 9763677) Emahazion T … Brookes AJ (Cytogenetics and cell genetics 1998) 2 3 58

Products for NDUFB1 Gene

Sources for NDUFB1 Gene

Content
Loading form....