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Aliases for NCRUPAR Gene

Subcategory (RNA class) for NCRUPAR Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for NCRUPAR Gene

  • Non-Protein Coding RNA, Upstream Of F2R/PAR1 2 3
  • Noncoding RNA Upstream Of The PAR-1 2 3
  • Non-Protein Coding RNA 193 2
  • NCRNA00193 3
  • NcR-UPAR 3
  • RF02155 5

External Ids for NCRUPAR Gene

ORGUL Members for NCRUPAR Gene

Previous GeneCards Identifiers for NCRUPAR Gene

  • GC00U928279
  • GC05U901352
  • GC05P076007

Summaries for NCRUPAR Gene

Entrez Gene Summary for NCRUPAR Gene

  • This non-coding RNA gene has been reported to have a positive regulatory affect during embryogenesis on the adjacent coagulation factor II (thrombin) receptor gene by Madamanchi et. al (PMID:12084570). [provided by RefSeq, Aug 2012]

GeneCards Summary for NCRUPAR Gene

NCRUPAR (Non-Protein Coding RNA, Upstream Of F2R/PAR1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with NCRUPAR include Glioblastoma and Astrocytoma.

Additional gene information for NCRUPAR Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCRUPAR Gene

Genomics for NCRUPAR Gene

GeneHancer (GH) Regulatory Elements for NCRUPAR Gene

Promoters and enhancers for NCRUPAR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J076709 Enhancer 1 ENCODE dbSUPER 650.7 -1.5 -1533 3.1 ZBTB21 INSM2 FEZF1 KLF14 BATF ZNF2 ZNF366 POLR2A EED FOS ENSG00000277188 NCRUPAR F2R F2RL2 F2RL1 ENSG00000225407
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NCRUPAR on UCSC Golden Path with GeneCards custom track

Genomic Locations for NCRUPAR Gene

Genomic Locations for NCRUPAR Gene
chr5:76,712,403-76,712,888
(GRCh38/hg38)
Size:
486 bases
Orientation:
Plus strand
chr5:76,007,763-76,008,686
(GRCh37/hg19)
Size:
924 bases
Orientation:
Plus strand

Genomic View for NCRUPAR Gene

Genes around NCRUPAR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCRUPAR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCRUPAR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCRUPAR Gene

Proteins for NCRUPAR Gene

Post-translational modifications for NCRUPAR Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCRUPAR Gene

Domains & Families for NCRUPAR Gene

Gene Families for NCRUPAR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NCRUPAR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCRUPAR Gene

Function for NCRUPAR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCRUPAR Gene

Localization for NCRUPAR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCRUPAR Gene

Pathways & Interactions for NCRUPAR Gene

SuperPathways for NCRUPAR Gene

No Data Available

Interacting Proteins for NCRUPAR Gene

Gene Ontology (GO) - Biological Process for NCRUPAR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCRUPAR Gene

Drugs & Compounds for NCRUPAR Gene

No Compound Related Data Available

Transcripts for NCRUPAR Gene

mRNA/cDNA for NCRUPAR Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for NCRUPAR Gene

No ASD Table

Relevant External Links for NCRUPAR Gene

GeneLoc Exon Structure for
NCRUPAR
ECgene alternative splicing isoforms for
NCRUPAR

Expression for NCRUPAR Gene

NURSA nuclear receptor signaling pathways regulating expression of NCRUPAR Gene:

NCRUPAR
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCRUPAR Gene

Orthologs for NCRUPAR Gene

Evolution for NCRUPAR Gene

ENSEMBL:
Gene Tree for NCRUPAR (if available)
TreeFam:
Gene Tree for NCRUPAR (if available)

No data available for Orthologs for NCRUPAR Gene

Paralogs for NCRUPAR Gene

No data available for Paralogs for NCRUPAR Gene

Variants for NCRUPAR Gene

Sequence variations from dbSNP and Humsavar for NCRUPAR Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1001944370 -- 76,711,491(+) A/G upstream_transcript_variant
rs1003256731 -- 76,713,261(+) T/G downstream_transcript_variant
rs1004058631 -- 76,710,501(+) C/G upstream_transcript_variant
rs1005085786 -- 76,712,204(+) A/G upstream_transcript_variant
rs1005336700 -- 76,711,921(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NCRUPAR Gene

Variant ID Type Subtype PubMed ID
nsv1035135 CNV gain 25217958

Additional Variant Information for NCRUPAR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCRUPAR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NCRUPAR Gene

Disorders for NCRUPAR Gene

MalaCards: The human disease database

(4) MalaCards diseases for NCRUPAR Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
glioblastoma
  • glioblastoma multiforme
astrocytoma
  • astrocytic tumor
gastric cancer
  • gastric cancer, somatic
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for NCRUPAR

genes like me logo Genes that share disorders with NCRUPAR: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NCRUPAR Gene

Publications for NCRUPAR Gene

  1. A noncoding RNA regulates human protease-activated receptor-1 gene during embryogenesis. (PMID: 12084570) Madamanchi NR … Aaron J (Biochimica et biophysica acta 2002) 2 3 58
  2. Downregulation of a long noncoding RNA-ncRuPAR contributes to tumor inhibition in colorectal cancer. (PMID: 25119598) Yan B … Liu L (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2014) 3 58

Products for NCRUPAR Gene

Sources for NCRUPAR Gene

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