Aliases for NCRNA00250 Gene

Subcategory (RNA class) for NCRNA00250 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for NCRNA00250 Gene

  • Non-Protein Coding RNA 250 3
  • Novel Transcript 5
  • Lnc-KHDRBS3-4 168
  • NONHSAG051359 92
  • HSALNG0068826 167
  • AC083843.1 5
  • C8orf24 3

External Ids for NCRNA00250 Gene

Previous GeneCards Identifiers for NCRNA00250 Gene

  • GC08U901454

Summaries for NCRNA00250 Gene

GeneCards Summary for NCRNA00250 Gene

NCRNA00250 (Non-Protein Coding RNA 250) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NCRNA00250 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NCRNA00250 Gene

Genomics for NCRNA00250 Gene

GeneHancer (GH) Regulatory Elements for NCRNA00250 Gene

Promoters and enhancers for NCRNA00250 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J134837 Enhancer 0.9 Ensembl ENCODE 524.6 +0.7 691 2.5 ATF2 MXI1 OSR2 WT1 CREB1 ZNF316 NFIC MAFF ZNF263 MAFK NCRNA00250 ZFAT MIR30B MIR30D LOC101927845
GH08J134843 Enhancer 0.6 Ensembl 27.1 +5.7 5732 0.4 CTCF REST TGIF2 SMC3 RAD21 SMAD4 XRCC5 HBP1 YY1 ZNF143 NCRNA00250 ZFAT MIR30B ENSG00000259820 LOC101927845
GH08J134814 Enhancer 0.7 Ensembl ENCODE 7.4 -22.5 -22464 2.8 FOXA2 FOXP1 KLF9 RXRA HNF4A GATAD2A FOXA1 SP1 FOXJ2 CEBPA ENSG00000259820 ZFAT NCRNA00250 MIR30D NONHSAG051359.2 LOC102723694
GH08J134870 Enhancer 0.7 Ensembl ENCODE 4.5 +33.2 33240 1 HES1 CEBPB JUND FOSL2 HNF4A MAX FOS ATF3 SP1 HNF4G lnc-ZFAT-7 MIR30B NCRNA00250 piR-41195-103 LOC101927845
GH08J134840 Enhancer 0.7 Ensembl ENCODE 0.7 +2.8 2806 1.5 NR2F2 JUND MITF RXRA HNF4A NFIA TCF7L2 USF2 SOX5 SP1 ZFAT MIR30B NCRNA00250 LOC101927845
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NCRNA00250 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NCRNA00250 Gene

Genomic Locations for NCRNA00250 Gene
chr8:134,838,069-134,849,367
(GRCh38/hg38)
Size:
11,299 bases
Orientation:
Plus strand

Genomic View for NCRNA00250 Gene

Genes around NCRNA00250 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCRNA00250 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCRNA00250 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCRNA00250 Gene

Proteins for NCRNA00250 Gene

Post-translational modifications for NCRNA00250 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCRNA00250 Gene

Domains & Families for NCRNA00250 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NCRNA00250 Gene

Function for NCRNA00250 Gene

Phenotypes From GWAS Catalog for NCRNA00250 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCRNA00250 Gene

Localization for NCRNA00250 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCRNA00250 Gene

Pathways & Interactions for NCRNA00250 Gene

PathCards logo

SuperPathways for NCRNA00250 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for NCRNA00250 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NCRNA00250 Gene

Drugs & Compounds for NCRNA00250 Gene

No Compound Related Data Available

Transcripts for NCRNA00250 Gene

mRNA/cDNA for NCRNA00250 Gene

16 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
4 LncBook transcripts :
14 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for NCRNA00250 Gene

No ASD Table

Relevant External Links for NCRNA00250 Gene

GeneLoc Exon Structure for
NCRNA00250

Expression for NCRNA00250 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NCRNA00250 Gene

genes like me logo Genes that share expression patterns with NCRNA00250: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCRNA00250 Gene

Orthologs for NCRNA00250 Gene

Evolution for NCRNA00250 Gene

ENSEMBL:
Gene Tree for NCRNA00250 (if available)
TreeFam:
Gene Tree for NCRNA00250 (if available)

No data available for Orthologs for NCRNA00250 Gene

Paralogs for NCRNA00250 Gene

No data available for Paralogs for NCRNA00250 Gene

Variants for NCRNA00250 Gene

Additional dbSNP identifiers (rs#s) for NCRNA00250 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for NCRNA00250 Gene

Disorders for NCRNA00250 Gene

No disorders were found for NCRNA00250 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NCRNA00250 Gene

Publications for NCRNA00250 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for NCRNA00250 Gene

Products for NCRNA00250 Gene

Sources for NCRNA00250 Gene