Aliases for NCOA2 Gene
Aliases for NCOA2 Gene
External Ids for NCOA2 Gene
- HGNC: 7669
- Entrez Gene: 10499
- Ensembl: ENSG00000140396
- OMIM: 601993
- UniProtKB: Q15596
Previous GeneCards Identifiers for NCOA2 Gene
- GC08M070964
- GC08M070747
- GC08M071074
- GC08M071186
- GC08M071016
- GC08M066517
Summaries for NCOA2 Gene
-
The protein encoded by this gene functions as a transcriptional coactivator for nuclear hormone receptors, including steroid, thyroid, retinoid, and vitamin D receptors. The encoded protein acts as an intermediary factor for the ligand-dependent activity of these nuclear receptors, which regulate their target genes upon binding of cognate response elements. This gene has been found to be involved in translocations that result in fusions with other genes in various cancers, including the lysine acetyltransferase 6A (KAT6A) gene in acute myeloid leukemia, the ETS variant 6 (ETV6) gene in acute lymphoblastic leukemia, and the hes related family bHLH transcription factor with YRPW motif 1 (HEY1) gene in mesenchymal chondrosarcoma. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2016]
GeneCards Summary for NCOA2 Gene
NCOA2 (Nuclear Receptor Coactivator 2) is a Protein Coding gene. Diseases associated with NCOA2 include Mesenchymal Chondrosarcoma and Indeterminate Cell Histiocytosis. Among its related pathways are Organelle biogenesis and maintenance and Thyroid hormone signaling pathway. Gene Ontology (GO) annotations related to this gene include chromatin binding and transcription factor binding. An important paralog of this gene is NCOA3.
UniProtKB/Swiss-Prot for NCOA2 Gene
-
Transcriptional coactivator for steroid receptors and nuclear receptors. Coactivator of the steroid binding domain (AF-2) but not of the modulating N-terminal domain (AF-1). Required with NCOA1 to control energy balance between white and brown adipose tissues. Critical regulator of glucose metabolism regulation, acts as RORA coactivator to specifically modulate G6PC expression. Involved in the positive regulation of the transcriptional activity of the glucocorticoid receptor NR3C1 by sumoylation enhancer RWDD3. Positively regulates the circadian clock by acting as a transcriptional coactivator for the CLOCK-ARNTL/BMAL1 heterodimer (By similarity).
Additional gene information for NCOA2 Gene
- Monarch Initiative
- Search for NCOA2 at DataMed
- Search for NCOA2 at HumanCyc
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCOA2 Gene
Genomics for NCOA2 Gene
GeneHancer (GH) Regulatory Elements for NCOA2 Gene
Promoters and enhancers for NCOA2 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH08I070400 | Promoter/Enhancer | 2.3 | EPDnew Ensembl ENCODE dbSUPER | 550.8 | +2.8 | 2832 | 5.1 | HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 | GC08P070403 NCOA2 XKR9 RNY3P14 | |
| GH08I069832 | Promoter/Enhancer | 2 | EPDnew Ensembl ENCODE | 9.7 | +571.5 | 571495 | 3.4 | HDGF PKNOX1 FEZF1 GLI4 ZNF2 YY1 ZNF121 GLIS2 ZNF213 ZNF207 | LOC101929759 SLCO5A1 LOC100129096 NCOA2 GC08P069795 LOC100101127 | |
| GH08I070171 | Enhancer | 1.2 | FANTOM5 Ensembl ENCODE | 13.7 | +232.0 | 232047 | 3.5 | PKNOX1 ATF1 BACH1 CEBPG BMI1 ZNF316 FOXK2 NFE2 ATF7 MAFK | NCOA2 H2AFZP2 BTF3P12 | |
| GH08I070259 | Enhancer | 0.5 | Ensembl | 11.4 | +146.3 | 146336 | 0.2 | PKNOX1 SP7 SPI1 ZBTB17 | NCOA2 BTF3P12 H2AFZP2 | |
| GH08I070216 | Enhancer | 1.4 | FANTOM5 Ensembl ENCODE | 1.4 | +186.2 | 186232 | 5.5 | HDGF PKNOX1 SIN3A BATF IRF4 TCF12 GLIS2 ATF7 ETV6 IKZF2 | NCOA2 BTF3P12 H2AFZP2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around NCOA2 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the NCOA2 gene promoter:
Regulatory Element Products
Genomic Locations for NCOA2 Gene
Genomic Locations for NCOA2 Gene
- chr8:70,109,762-70,405,437
- (GRCh38/hg38)
- Size:
- 295,676 bases
- Orientation:
- Minus strand
- chr8:71,021,997-71,316,040
- (GRCh37/hg19)
Genomic View for NCOA2 Gene
Genes around NCOA2 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 8q13.3 by Ensembl
- 8q13.3 by Entrez Gene
- 8q13.3 by HGNC
NCOA2 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for NCOA2 Gene
Proteins for NCOA2 Gene
-
Protein details for NCOA2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q15596-NCOA2_HUMAN
- Recommended name:
- Nuclear receptor coactivator 2
- Protein Accession:
- Q15596
- Q14CD2
Protein attributes for NCOA2 Gene
- Size:
- 1464 amino acids
- Molecular mass:
- 159157 Da
- Quaternary structure:
-
- Present in a complex containing NCOA3, IKKA, IKKB, IKBKG and CREBBP. Interacts (via C-terminus) with CREBBP. Interacts with ESR1, HIF1A, NCOA1, APEX, NR3C1, NR3C2, CARM1, RARA, and RXRA. Present in a complex containing CARM1 and EP300/P300. Interacts with CASP8AP2 and TTLL5/STAMP. Interacts with PSMB9 and DDX5. Interacts (via LXXLL 1, 2 and 3 motifs) with RORA and RORC (via AF-2 motif). Interacts with RWDD3. Interacts with CLOCK and ARNTL/BMAL1 (By similarity). Interacts with NR4A3; potentiates the activity of the NR4A3 (By similarity).
Protein Expression for NCOA2 Gene
Selected DME Specific Peptides for NCOA2 Gene
- Q15596:
-
- SHTFNCRML
- LEALDGFF
Post-translational modifications for NCOA2 Gene
Other Protein References for NCOA2 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- R&D Systems Antibodies for NCOA2 (NCOA2)
- Novus Biologicals Antibodies for NCOA2
-
Abcam antibodies for NCOA2
- Invitrogen Antibodies for NCOA2
- GeneTex NCOA2 antibody for NCOA2
-
Santa Cruz Biotechnology (SCBT) Antibodies for NCOA2
Protein Products
-
OriGene Purified Proteins for NCOA2
- Search Origene for MassSpec and Protein Over-expression Lysates for NCOA2
- Origene Custom Protein Services for NCOA2
- Search GeneTex for Proteins for NCOA2
-
Abcam proteins for NCOA2
Assay Products
Domains & Families for NCOA2 Gene
Gene Families for NCOA2 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Cancer-related genes
- Disease related genes
- Predicted intracellular proteins
- Transcription factors
Protein Domains for NCOA2 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for NCOA2 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q15596UniProtKB/Swiss-Prot:
NCOA2_HUMAN :- Contains four Leu-Xaa-Xaa-Leu-Leu (LXXLL) motifs. The LXXLL motifs are essential for the association with nuclear receptors and are, at least in part, functionally redundant.
- Belongs to the SRC/p160 nuclear receptor coactivator family.
- Domain:
-
- Contains four Leu-Xaa-Xaa-Leu-Leu (LXXLL) motifs. The LXXLL motifs are essential for the association with nuclear receptors and are, at least in part, functionally redundant.
- The LLXXLXXXL motif is involved in transcriptional coactivation and CREBBP/CBP binding.
- Contains 2 C-terminal transcription activation domains (AD1 and AD2) that can function independently.
- Family:
-
- Belongs to the SRC/p160 nuclear receptor coactivator family.
Function for NCOA2 Gene
Molecular function for NCOA2 Gene
- UniProtKB/Swiss-Prot Function:
- Transcriptional coactivator for steroid receptors and nuclear receptors. Coactivator of the steroid binding domain (AF-2) but not of the modulating N-terminal domain (AF-1). Required with NCOA1 to control energy balance between white and brown adipose tissues. Critical regulator of glucose metabolism regulation, acts as RORA coactivator to specifically modulate G6PC expression. Involved in the positive regulation of the transcriptional activity of the glucocorticoid receptor NR3C1 by sumoylation enhancer RWDD3. Positively regulates the circadian clock by acting as a transcriptional coactivator for the CLOCK-ARNTL/BMAL1 heterodimer (By similarity).
Enzyme Numbers (IUBMB) for NCOA2 Gene
Phenotypes From GWAS Catalog for NCOA2 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000978 | RNA polymerase II proximal promoter sequence-specific DNA binding | IEA | -- |
| GO:0001162 | RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding | IEA | -- |
| GO:0003682 | chromatin binding | IEA | -- |
| GO:0003713 | transcription coactivator activity | NAS,IEA | 9430642 |
| GO:0005102 | receptor binding | IEA | -- |
Phenotypes for NCOA2 Gene
- MGI mutant phenotypes for NCOA2:
- inferred from 3 alleles
- GenomeRNAi human phenotypes for NCOA2:
-
- Increased viability
- Increased vaccinia virus (VACV) infection
- Dynamic nuclei (hole, folded or small irregular)
- Increased viability after borna disease (rVSVI9G*/BDVG) virus infection
- Negative genetic interaction between PTTG1-/- and PTTG1+/+
- Decreased shRNA abundance (Z-score < -2)
- Increased shRNA abundance (Z-score > 2)
Animal Models for NCOA2 Gene
- MGI Knock Outs for NCOA2:
-
- Ncoa2 tm1.2Ipc
Animal Model Products
-
Taconic Biosciences Mouse Models for NCOA2
- Cyagen custom Knockout/knockin (KOKI) mouse models for NCOA2
-
-
ViGene Biosciences lentiviral particle packaged cDNA for NCOA2 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for NCOA2 gene
- Search ViGene Biosciences for NCOA2
CRISPR Products
-
OriGene CRISPR knockouts for NCOA2
- genomics-online: gRNA clones - Search results for 93 available NCOA2 gene related products
- Overview of 93 available NCOA2 gene related products
- Applied Biological Materials CRISPR for NCOA2
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for NCOA2
- GenScript: Design CRISPR guide RNA sequences for NCOA2
miRNA for NCOA2 Gene
- miRTarBase miRNAs that target NCOA2
-
- hsa-mir-137 (MIRT004004)
- hsa-mir-193b-3p (MIRT041215)
- hsa-mir-544a (MIRT440135)
- hsa-mir-1185-5p (MIRT440136)
- hsa-mir-6864-5p (MIRT501832)
- hsa-mir-4471 (MIRT501833)
- hsa-mir-8059 (MIRT501834)
- hsa-mir-539-5p (MIRT501835)
- hsa-mir-3179 (MIRT501836)
- hsa-mir-7515 (MIRT501837)
- hsa-mir-6822-5p (MIRT501838)
- hsa-mir-6750-5p (MIRT501839)
- hsa-mir-3120-3p (MIRT501840)
- hsa-mir-429 (MIRT501841)
- hsa-mir-200b-3p (MIRT501842)
- hsa-mir-200c-3p (MIRT501843)
miRNA Products
- Search ViGene Biosciences for NCOA2
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for NCOA2
- Browse OriGene Inhibitory RNA Products For NCOA2
- genomics-online: shRNA clones - Search results for 93 available NCOA2 gene related products
- Overview of 93 available NCOA2 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for NCOA2 gene
Clone Products
- VectorBuilder custom plasmid, inducible vectors for NCOA2
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for NCOA2
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for NCOA2
- Applied Biological Materials Clones for NCOA2
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for NCOA2
-
ViGene Biosciences adenoviral particle packaged cDNA for NCOA2 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for NCOA2 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for NCOA2 gene
No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for NCOA2 Gene
Localization for NCOA2 Gene
Subcellular locations from UniProtKB/Swiss-Prot for NCOA2 Gene
- Nucleus.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| cytosol | 2 |
| peroxisome | 1 |
- Nuclear bodies (3)
- Nucleoplasm (3)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IBA,IEA | -- |
| GO:0005654 | nucleoplasm | TAS | -- |
| GO:0005737 | cytoplasm | IEA | -- |
| GO:0016604 | nuclear body | IDA | -- |
| GO:0043234 | protein complex | IMP | 15641800 |
Pathways & Interactions for NCOA2 Gene
Pathways by source for NCOA2 Gene
12 BioSystems pathways for NCOA2 Gene
35 Reactome pathways for NCOA2 Gene
1 KEGG pathway for NCOA2 Gene
7 GeneGo (Thomson Reuters) pathways for NCOA2 Gene
- Development Ligand-dependent activation of the ESR1/AP-1 pathway
- Development Ligand-independent activation of ESR1 and ESR2
- Development Role of HDAC and calcium/calmodulin-dependent kinase (CaMK) in control of skeletal myogenesis
- Development_Glucocorticoid receptor signaling
- Immune response Function of MEF2 in T lymphocytes
3 Qiagen pathways for NCOA2 Gene
Interacting Proteins for NCOA2 Gene
Selected Interacting proteins:
Q15596-NCOA2_HUMAN
ENSP00000399968
for NCOA2 Gene via
IID
STRING
UniProtKB
MINT
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000122 | negative regulation of transcription by RNA polymerase II | IEA | -- |
| GO:0006351 | transcription, DNA-templated | IEA | -- |
| GO:0006355 | regulation of transcription, DNA-templated | NAS,IEA | 8670870 |
| GO:0007623 | circadian rhythm | IEA | -- |
| GO:0010906 | regulation of glucose metabolic process | IEA | -- |
Drugs & Compounds for NCOA2 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| Diethylstilbestrol | Approved, Investigational | Pharma | Agonist, Target | 5 | ||
| Estradiol | Approved, Investigational, Vet_approved | Pharma | Target | Sex hormone | 1400 | |
| (2E,4E)-11-METHOXY-3,7,11-TRIMETHYLDODECA-2,4-DIENOIC ACID | Experimental | Pharma | Target | 0 | ||
| (9ALPHA,13BETA,17BETA)-2-[(1Z)-BUT-1-EN-1-YL]ESTRA-1,3,5(10)-TRIENE-3,17-DIOL | Experimental | Pharma | Target | 0 | ||
| (9BETA,11ALPHA,13ALPHA,14BETA,17ALPHA)-11-(METHOXYMETHYL)ESTRA-1(10),2,4-TRIENE-3,17-DIOL | Experimental | Pharma | Target | 0 |
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs |
|---|
Transcripts for NCOA2 Gene
mRNA/cDNA for NCOA2 Gene
- (19) REFSEQ mRNAs :
- (6) Additional mRNA sequences :
- (170) Selected AceView cDNA sequences:
- (8) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for NCOA2 Gene
CRISPR Products
-
OriGene CRISPR knockouts for NCOA2
- genomics-online: gRNA clones - Search results for 93 available NCOA2 gene related products
- Overview of 93 available NCOA2 gene related products
- Applied Biological Materials CRISPR for NCOA2
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for NCOA2
- GenScript: Design CRISPR guide RNA sequences for NCOA2
miRNA Products
- Search ViGene Biosciences for NCOA2
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for NCOA2
- Browse OriGene Inhibitory RNA Products For NCOA2
- genomics-online: shRNA clones - Search results for 93 available NCOA2 gene related products
- Overview of 93 available NCOA2 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for NCOA2 gene
Clone Products
- VectorBuilder custom plasmid, inducible vectors for NCOA2
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for NCOA2
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for NCOA2
- Applied Biological Materials Clones for NCOA2
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b | ^ | 15 | ^ | 16a | · | 16b | ^ | 17a | · | 17b | ^ | 18a | · | 18b | ^ | 19a | · | 19b | ^ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||||
| SP2: | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
| SP3: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP4: | - | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP5: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP6: |
| ExUns: | 20 | ^ | 21a | · | 21b | ^ | 22 | ^ | 23 | ^ | 24 | ^ | 25 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | ||||||||||||
| SP2: | |||||||||||||
| SP3: | |||||||||||||
| SP4: | |||||||||||||
| SP5: | |||||||||||||
| SP6: |
Expression for NCOA2 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Thymus (Hematopoietic System)
- T Helper Cells Thymus
-
Blood (Cardiovascular System)
- T Helper Cells Thymus
This gene is overexpressed in Esophagus (49.8) and Serum (14.4).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NCOA2 Gene
NURSA nuclear receptor signaling pathways regulating expression of NCOA2 Gene:
NCOA2SOURCE GeneReport for Unigene cluster for NCOA2 Gene:
Hs.446678Evidence on tissue expression from TISSUES for NCOA2 Gene
- Liver(4.4)
- Nervous system(2.5)
- Kidney(2)
- Thyroid gland(2)
Primer Products
-
OriGene qPCR primer pairs for NCOA2
Gene Expression Assay Products
No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCOA2 Gene
Orthologs for NCOA2 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | NCOA2 33 34 |
|
||
| dog (Canis familiaris) |
Mammalia | NCOA2 34 33 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | NCOA2 34 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Ncoa2 33 16 34 |
|
||
| cow (Bos Taurus) |
Mammalia | NCOA2 33 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Ncoa2 33 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 34 |
|
OneToMany | |
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| chicken (Gallus gallus) |
Aves | NCOA2 34 33 |
|
OneToOne | |
| lizard (Anolis carolinensis) |
Reptilia | NCOA2 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | ncoa2 33 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | ncoa2-A 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | ncoa2 34 33 |
|
OneToOne | |
| tif2 33 |
|
- Species where no ortholog for NCOA2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for NCOA2 Gene
(5) SIMAP similar genes for NCOA2 Gene using alignment to 6 proteins:
Variants for NCOA2 Gene
| SNP ID | Clin | Chr 08 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000014334 | -- | 70,136,002(-) | C/G/T | genic_downstream_transcript_variant, intron_variant | |
| rs1000021309 | -- | 70,265,850(-) | AAA/A | genic_upstream_transcript_variant, intron_variant | |
| rs1000021761 | -- | 70,158,594(-) | A/C | intron_variant | |
| rs1000024047 | -- | 70,225,395(-) | A/C | genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant | |
| rs1000031129 | -- | 70,113,960(-) | C/T | genic_downstream_transcript_variant, intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1404e214 | CNV | loss | 21293372 |
| esv2737143 | CNV | deletion | 23290073 |
| esv3572808 | CNV | loss | 25503493 |
| esv3617565 | CNV | gain | 21293372 |
| nsv1024295 | CNV | gain | 25217958 |
| nsv1068714 | OTHER | inversion | 25765185 |
| nsv1075557 | CNV | deletion | 25765185 |
| nsv1126855 | CNV | deletion | 24896259 |
| nsv1137614 | CNV | deletion | 24896259 |
| nsv1145196 | CNV | deletion | 24896259 |
| nsv397839 | CNV | deletion | 16902084 |
| nsv472609 | CNV | novel sequence insertion | 20440878 |
| nsv508513 | CNV | deletion | 20534489 |
| nsv6246 | CNV | insertion | 18451855 |
| nsv6247 | CNV | deletion | 18451855 |
| nsv6248 | CNV | deletion | 18451855 |
| nsv831352 | CNV | gain | 17160897 |
| nsv951442 | CNV | duplication | 24416366 |
| nsv967603 | CNV | duplication | 23825009 |
Residual Variation Intolerance Score:
13.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
3.06;
50.56% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for NCOA2 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NCOA2 Gene
Disorders for NCOA2 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| mesenchymal chondrosarcoma |
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| indeterminate cell histiocytosis |
|
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| spindle cell rhabdomyosarcoma |
|
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| periosteal chondrosarcoma |
|
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| chondrosarcoma |
|
|
Search NCOA2 in MalaCards
View complete list of genes associated with diseases
UniProtKB/Swiss-Prot
NCOA2_HUMAN- Note=Chromosomal aberrations involving NCOA2 may be a cause of acute myeloid leukemias. Inversion inv(8)(p11;q13) generates the KAT6A-NCOA2 oncogene, which consists of the N-terminal part of KAT6A and the C-terminal part of NCOA2/TIF2. KAT6A-NCOA2 binds to CREBBP and disrupts its function in transcription activation. {ECO:0000269 PubMed:12676584, ECO:0000269 PubMed:15657427, ECO:0000269 PubMed:9558366}.
Additional Disease Information for NCOA2
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for Genatlas for NCOA2 Gene
Publications for NCOA2 Gene
- TIF2, a 160 kDa transcriptional mediator for the ligand-dependent activation function AF-2 of nuclear receptors. (PMID: 8670870) Voegel JJ … Gronemeyer H (The EMBO journal 1996) 2 3 4 22 58
- Screening and association testing of common coding variation in steroid hormone receptor co-activator and co-repressor genes in relation to breast cancer risk: the Multiethnic Cohort. (PMID: 19183483) Haiman CA … Press MF (BMC cancer 2009) 3 22 44 58
- Vitamin D-related genes, serum vitamin D concentrations and prostate cancer risk. (PMID: 19255064) Ahn J … Prostate, Lung, Colorectal and Ovarian Trial Project Team (Carcinogenesis 2009) 3 22 44 58
- GRIP1, a transcriptional coactivator for the AF-2 transactivation domain of steroid, thyroid, retinoid, and vitamin D receptors. (PMID: 9111344) Hong H … Stallcup MR (Molecular and cellular biology 1997) 2 3 22 58
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
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Sources for NCOA2 Gene
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