Aliases for NCMAP-DT Gene

Subcategory (RNA class) for NCMAP-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for NCMAP-DT Gene

  • NCMAP Divergent Transcript 2 3 5
  • NCMAP-DT 2 5
  • NONHSAG000700.2 91
  • HSALNG0001720 164
  • Lnc-STPG1-3 165

External Ids for NCMAP-DT Gene

Summaries for NCMAP-DT Gene

GeneCards Summary for NCMAP-DT Gene

NCMAP-DT (NCMAP Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NCMAP-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NCMAP-DT Gene

Genomics for NCMAP-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NCMAP-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J024555 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 606.3 -0.9 -899 3.5 GATAD2A KDM1A ZIC2 ZSCAN4 RBFOX2 RXRB IRF2 ZNF24 EZH2 MNT NCMAP NCMAP-DT RCAN3 RPL26P8 SRRM1
GH01J024551 Enhancer 1.2 ENCODE CraniofacialAtlas dbSUPER 5 +4.0 3950 1.9 GATAD2A TFE3 RFX1 NFKBIZ RCOR2 ZNF24 IRF2 SP1 FOXJ2 CEBPA NCMAP NCMAP-DT NIPAL3 lnc-NCMAP-1 RCAN3
GH01J024565 Enhancer 1.1 ENCODE dbSUPER 5.2 -11.5 -11546 3.3 HNRNPL CREB1 GATAD2A TFE3 SOX13 NFKBIZ RCOR2 FOXA1 ZIC2 RXRB RCAN3 NCMAP NCMAP-DT lnc-RCAN3-2 piR-50437-021 SRRM1
GH01J024562 Enhancer 0.9 Ensembl dbSUPER 5.2 -6.8 -6777 1.2 ZIC2 PATZ1 ZNF37A ZBTB44 SP1 ESR1 TSHZ1 ZNF491 ZBTB48 ZNF423 RPL26P8 lnc-RCAN3-2 RCAN3 SRSF10 SRRM1 NCMAP NCMAP-DT
GH01J024521 Enhancer 0.7 Ensembl dbSUPER 4.7 +32.2 32223 5.6 RNF2 KDM1A CEBPA SMARCA4 HNF4A CEBPG ZNF121 RCAN3 NCMAP NIPAL3 NCMAP-DT lnc-STPG1-4 RCAN3AS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NCMAP-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NCMAP-DT Gene

Genomic Locations for NCMAP-DT Gene
chr1:24,536,648-24,556,024
(GRCh38/hg38)
Size:
19,377 bases
Orientation:
Minus strand
chr1:24,863,138-24,882,515
(GRCh37/hg19)
Size:
19,378 bases
Orientation:
Minus strand

Genomic View for NCMAP-DT Gene

Genes around NCMAP-DT on UCSC Golden Path with GeneCards custom track
NCMAP-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
NCMAP-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCMAP-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCMAP-DT Gene

Proteins for NCMAP-DT Gene

Post-translational modifications for NCMAP-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCMAP-DT Gene

Domains & Families for NCMAP-DT Gene

Gene Families for NCMAP-DT Gene

genes like me logo Genes that share domains with NCMAP-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NCMAP-DT Gene

Function for NCMAP-DT Gene

Phenotypes From GWAS Catalog for NCMAP-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCMAP-DT Gene

Localization for NCMAP-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCMAP-DT Gene

Pathways & Interactions for NCMAP-DT Gene

PathCards logo

SuperPathways for NCMAP-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for NCMAP-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NCMAP-DT Gene

Drugs & Compounds for NCMAP-DT Gene

No Compound Related Data Available

Transcripts for NCMAP-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NCMAP-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075F050_9606 lncRNA 973 3

HGNC: 54327,

RefSeq: NR_109781,

LNCipedia: lnc-STPG1-3:2,

URS0000303B47_9606 lncRNA 1445 2

Ensembl: ENST00000577528 (view in UCSC) ,

LNCipedia: lnc-STPG1-3:1,

URS00008B556E_9606 lncRNA 420 3

LncBook: HSALNT0003324,

LNCipedia: lnc-STPG1-3:5,

NONCODE: NONHSAT001650.2,

URS00008B6475_9606 lncRNA 1450 2

LNCipedia: lnc-STPG1-3:3,

NONCODE: NONHSAT001651.2,

URS00008B7308_9606 lncRNA 1338 1

LNCipedia: lnc-STPG1-3:4,

NCMAP-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NCMAP-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NCMAP-DT Gene

No ASD Table

Relevant External Links for NCMAP-DT Gene

GeneLoc Exon Structure for
NCMAP-DT

Expression for NCMAP-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCMAP-DT Gene

Orthologs for NCMAP-DT Gene

Evolution for NCMAP-DT Gene

ENSEMBL:
Gene Tree for NCMAP-DT (if available)
TreeFam:
Gene Tree for NCMAP-DT (if available)

No data available for Orthologs for NCMAP-DT Gene

Paralogs for NCMAP-DT Gene

No data available for Paralogs for NCMAP-DT Gene

Variants for NCMAP-DT Gene

Additional dbSNP identifiers (rs#s) for NCMAP-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for NCMAP-DT Gene

Variant ID Type Subtype PubMed ID
nsv1140258 OTHER inversion 24896259

Additional Variant Information for NCMAP-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCMAP-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NCMAP-DT Gene

Disorders for NCMAP-DT Gene

No disorders were found for NCMAP-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NCMAP-DT Gene

Publications for NCMAP-DT Gene

No publications were found for NCMAP-DT Gene.

No data available for Mastermind for NCMAP-DT Gene

Products for NCMAP-DT Gene

Sources for NCMAP-DT Gene