Aliases for NCKAP5-IT1 Gene

Data sources for NCKAP5-IT1 Gene:

Subcategory (RNA class) for NCKAP5-IT1 Gene

lncRNA

Aliases for NCKAP5-IT1 Gene

External Ids for NCKAP5-IT1 Gene

Previous GeneCards Identifiers for NCKAP5-IT1 Gene

  • GC00U933176
  • GC02M134190

Summaries for NCKAP5-IT1 Gene

GeneCards Summary for NCKAP5-IT1 Gene

NCKAP5-IT1 (NCKAP5 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NCKAP5-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NCKAP5-IT1 Gene

Genomics for NCKAP5-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NCKAP5-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J133433 Enhancer 1.2 FANTOM5 Ensembl ENCODE 250.7 -0.8 -778 2.8 FEZF1 BRCA1 CTCF CEBPB EP300 RAD21 CTBP1 RFX5 ZNF843 SMC3 HSALNG0018995 NCKAP5-IT1 NCKAP5 LYPD1
GH02J133430 Enhancer 0.6 Ensembl ENCODE 0.7 +2.5 2487 1.2 PRDM1 TCF7L2 RFX1 FOS NCKAP5-IT1 RN7SKP154 lnc-LYPD1-4 NCKAP5 LYPD1
GH02J133420 Enhancer 0.9 Ensembl ENCODE 0.4 +10.6 10649 5.1 CEBPB RXRA CTBP1 FOXA2 SMARCA5 TCF7L2 PRDM6 CTCF FOXA1 JUND NCKAP5-IT1 lnc-LYPD1-4 RN7SKP154 NCKAP5 LYPD1
GH02J133415 Enhancer 0.5 Ensembl 0.4 +18.7 18697 0.8 BHLHE40 HNF4A RAD21 REST MTA2 RXRA NCKAP5-IT1 RN7SKP154 lnc-LYPD1-4 NCKAP5 LYPD1
GH02J133411 Enhancer 0.5 Ensembl 0.3 +21.4 21398 1.8 CEBPB CTCF ZBTB40 RAD21 ZNF579 RNU6-579P RN7SKP154 NCKAP5-IT1 lnc-LYPD1-4 NCKAP5 LYPD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NCKAP5-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NCKAP5-IT1 Gene

Latest Assembly
chr2:133,431,665-133,433,898
(GRCh38/hg38)
Size:
2,234 bases
Orientation:
Minus strand

Previous Assembly
chr2:134,189,237-134,191,468
(GRCh37/hg19 by Ensembl)
Size:
2,232 bases
Orientation:
Minus strand

Genomic View for NCKAP5-IT1 Gene

Genes around NCKAP5-IT1 on UCSC Golden Path with GeneCards custom track
NCKAP5-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NCKAP5-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCKAP5-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for NCKAP5-IT1 Gene

Proteins for NCKAP5-IT1 Gene

Post-translational modifications for NCKAP5-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCKAP5-IT1 Gene

Domains & Families for NCKAP5-IT1 Gene

Gene Families for NCKAP5-IT1 Gene

genes like me logo Genes that share domains with NCKAP5-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NCKAP5-IT1 Gene

Function for NCKAP5-IT1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCKAP5-IT1 Gene

Localization for NCKAP5-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCKAP5-IT1 Gene

Pathways & Interactions for NCKAP5-IT1 Gene

PathCards logo

SuperPathways for NCKAP5-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NCKAP5-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NCKAP5-IT1 Gene

Drugs & Compounds for NCKAP5-IT1 Gene

No Compound Related Data Available

Transcripts for NCKAP5-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NCKAP5-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000477719_9606 lncRNA 556 4

Ensembl: ENST00000416437 (view in UCSC) ,

LncBook: HSALNT0040110,

LNCipedia: NCKAP5-IT1:1,

NONCODE: NONHSAT074548.2,

URS00009AE90A_9606 lncRNA 554 2

LncBook: HSALNT0040111,

NONCODE: NONHSAT185561.1,

URS0001BE10BD_9606 lncRNA 554 1

LncBook: HSALNT0040110,

URS0001BE8033_9606 lncRNA 554 1

LncBook: HSALNT0040111,

NCKAP5-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NCKAP5-IT1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NCKAP5-IT1 Gene

No ASD Table

Relevant External Links for NCKAP5-IT1 Gene

GeneLoc Exon Structure for
NCKAP5-IT1

Expression for NCKAP5-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NCKAP5-IT1 Gene

genes like me logo Genes that share expression patterns with NCKAP5-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCKAP5-IT1 Gene

Orthologs for NCKAP5-IT1 Gene

Evolution for NCKAP5-IT1 Gene

ENSEMBL:
Gene Tree for NCKAP5-IT1 (if available)
TreeFam:
Gene Tree for NCKAP5-IT1 (if available)

No data available for Orthologs for NCKAP5-IT1 Gene

Paralogs for NCKAP5-IT1 Gene

No data available for Paralogs for NCKAP5-IT1 Gene

Variants for NCKAP5-IT1 Gene

Additional Variant Information for NCKAP5-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCKAP5-IT1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NCKAP5-IT1 Gene

Disorders for NCKAP5-IT1 Gene

Additional Disease Information for NCKAP5-IT1

Open Targets Platform
Open Targets Platform

No disorders were found for NCKAP5-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCKAP5-IT1 Gene

Publications for NCKAP5-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for NCKAP5-IT1 Gene

Products for NCKAP5-IT1 Gene

Sources for NCKAP5-IT1 Gene