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Aliases for NCKAP5-IT1 Gene
Data sources for NCKAP5-IT1 Gene:
Subcategory (RNA class) for NCKAP5-IT1 Gene
lncRNA
Aliases for NCKAP5-IT1 Gene
- NCKAP5 Intronic Transcript 1 (HGNC, NCBI Entrez Gene, Ensembl)
- NCKAP5 Intronic Transcript 1 (Non-Protein Coding) (HGNC, NCBI Entrez Gene)
- NCKAP5-IT1 (Ensembl, LNCipedia)
- NONHSAG029346.2 (NONCODE)
- HSALNG0018994 (LncBook)
External Ids for NCKAP5-IT1 Gene
- HGNC: 41497
- NCBI Entrez Gene: 100874346
- Ensembl: ENSG00000232474
Previous GeneCards Identifiers for NCKAP5-IT1 Gene
- GC00U933176
- GC02M134190
Summaries for NCKAP5-IT1 Gene
GeneCards Summary for NCKAP5-IT1 Gene
NCKAP5-IT1 (NCKAP5 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for NCKAP5-IT1 Gene
- HGNC (41497)
- NCBI Entrez Gene (100874346)
- Ensembl (ENSG00000232474)
- Open Targets Platform(ENSG00000232474)
- Search for NCKAP5-IT1 at DataMed
- Search for NCKAP5-IT1 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NCKAP5-IT1 Gene
Genomics for NCKAP5-IT1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for NCKAP5-IT1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J133433 | Enhancer | 1.2 | FANTOM5 Ensembl ENCODE | 250.7 | -0.8 | -778 | 2.8 | FEZF1 BRCA1 CTCF CEBPB EP300 RAD21 CTBP1 RFX5 ZNF843 SMC3 | HSALNG0018995 NCKAP5-IT1 NCKAP5 LYPD1 | |
| GH02J133430 | Enhancer | 0.6 | Ensembl ENCODE | 0.7 | +2.5 | 2487 | 1.2 | PRDM1 TCF7L2 RFX1 FOS | NCKAP5-IT1 RN7SKP154 lnc-LYPD1-4 NCKAP5 LYPD1 | |
| GH02J133420 | Enhancer | 0.9 | Ensembl ENCODE | 0.4 | +10.6 | 10649 | 5.1 | CEBPB RXRA CTBP1 FOXA2 SMARCA5 TCF7L2 PRDM6 CTCF FOXA1 JUND | NCKAP5-IT1 lnc-LYPD1-4 RN7SKP154 NCKAP5 LYPD1 | |
| GH02J133415 | Enhancer | 0.5 | Ensembl | 0.4 | +18.7 | 18697 | 0.8 | BHLHE40 HNF4A RAD21 REST MTA2 RXRA | NCKAP5-IT1 RN7SKP154 lnc-LYPD1-4 NCKAP5 LYPD1 | |
| GH02J133411 | Enhancer | 0.5 | Ensembl | 0.3 | +21.4 | 21398 | 1.8 | CEBPB CTCF ZBTB40 RAD21 ZNF579 | RNU6-579P RN7SKP154 NCKAP5-IT1 lnc-LYPD1-4 NCKAP5 LYPD1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around NCKAP5-IT1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for NCKAP5-IT1 Gene
Latest Assembly
- chr2:133,431,665-133,433,898
- (GRCh38/hg38)
- Size:
- 2,234 bases
- Orientation:
- Minus strand
Previous Assembly
- chr2:134,189,237-134,191,468
- (GRCh37/hg19 by Ensembl)
- Size:
- 2,232 bases
- Orientation:
- Minus strand
Genomic View for NCKAP5-IT1 Gene
Genes around NCKAP5-IT1 on UCSC Golden Path with GeneCards custom track
NCKAP5-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2q21.2 by HGNC
- 2q21.2 by Entrez Gene
- 2q21.2 by Ensembl
NCKAP5-IT1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for NCKAP5-IT1 Gene
Proteins for NCKAP5-IT1 Gene
Post-translational modifications for NCKAP5-IT1 Gene
No Post-translational modifications
No data available for DME Specific Peptides for NCKAP5-IT1 Gene
Domains & Families for NCKAP5-IT1 Gene
Gene Families for NCKAP5-IT1 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NCKAP5-IT1 Gene
Function for NCKAP5-IT1 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for NCKAP5-IT1 - Starting at $85 >
- * NCKAP5-IT1 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for NCKAP5-IT1 - Starting at $45 >
- * NCKAP5-IT1 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCKAP5-IT1 Gene
Localization for NCKAP5-IT1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCKAP5-IT1 Gene
Transcripts for NCKAP5-IT1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for NCKAP5-IT1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000477719_9606 | lncRNA | 556 | 4 |
Ensembl: ENST00000416437 (view in UCSC) , LncBook: HSALNT0040110, LNCipedia: NCKAP5-IT1:1, NONCODE: NONHSAT074548.2, |
| URS00009AE90A_9606 | lncRNA | 554 | 2 |
LncBook: HSALNT0040111, NONCODE: NONHSAT185561.1, |
| URS0001BE10BD_9606 | lncRNA | 554 | 1 |
LncBook: HSALNT0040110, |
| URS0001BE8033_9606 | lncRNA | 554 | 1 |
LncBook: HSALNT0040111, |
NCKAP5-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for NCKAP5-IT1 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for NCKAP5-IT1 - Starting at $85 >
- * NCKAP5-IT1 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for NCKAP5-IT1 - Starting at $45 >
- * NCKAP5-IT1 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Relevant External Links for NCKAP5-IT1 Gene
- GeneLoc Exon Structure for
- NCKAP5-IT1
Expression for NCKAP5-IT1 Gene
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCKAP5-IT1 Gene
Orthologs for NCKAP5-IT1 Gene
No data available for Orthologs for NCKAP5-IT1 Gene
Paralogs for NCKAP5-IT1 Gene
No data available for Paralogs for NCKAP5-IT1 Gene
Variants for NCKAP5-IT1 Gene
Additional Variant Information for NCKAP5-IT1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- NCKAP5-IT1
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NCKAP5-IT1 Gene
Disorders for NCKAP5-IT1 Gene
Additional Disease Information for NCKAP5-IT1
- Open Targets Platform
- Open Targets Platform
No disorders were found for NCKAP5-IT1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCKAP5-IT1 Gene
Publications for NCKAP5-IT1 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
No data available for Mastermind for NCKAP5-IT1 Gene
Products for NCKAP5-IT1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for NCKAP5-IT1
- Origene Custom Protein Services for NCKAP5-IT1
- Browse OriGene Inhibitory RNA Products For NCKAP5-IT1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for NCKAP5-IT1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For NCKAP5-IT1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for NCKAP5-IT1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for NCKAP5-IT1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for NCKAP5-IT1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for NCKAP5-IT1
Sources for NCKAP5-IT1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB