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Aliases for NCKAP5-IT1 Gene

Subcategory (RNA class) for NCKAP5-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NCKAP5-IT1 Gene

  • NCKAP5 Intronic Transcript 1 2 3 5
  • NCKAP5 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for NCKAP5-IT1 Gene

Previous GeneCards Identifiers for NCKAP5-IT1 Gene

  • GC00U933176
  • GC02M134190

Summaries for NCKAP5-IT1 Gene

GeneCards Summary for NCKAP5-IT1 Gene

NCKAP5-IT1 (NCKAP5 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NCKAP5-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCKAP5-IT1 Gene

Genomics for NCKAP5-IT1 Gene

GeneHancer (GH) Regulatory Elements for NCKAP5-IT1 Gene

Promoters and enhancers for NCKAP5-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I133433 Enhancer 1.1 FANTOM5 ENCODE 550.8 -0.8 -779 2.8 PKNOX1 NFIB INSM2 FEZF1 RAD21 BRCA1 RFX5 ZNF366 ZSCAN5C FOS NCKAP5-IT1 NCKAP5 GC02P133505
GH02I133430 Enhancer 0.5 ENCODE 0.8 +2.5 2473 1.2 SP1 RFX1 FOSL2 FOS PRDM1 TCF7L2 NCKAP5-IT1 RN7SKP154 NCKAP5
GH02I133420 Enhancer 0.9 Ensembl ENCODE 0.4 +12.4 12420 1.6 NCOA3 CTCF PKNOX1 KLF1 FOXA2 SIN3A RAD21 CTBP1 GATA3 POLR2A NCKAP5-IT1 RN7SKP154 NCKAP5
GH02I133504 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 -71.2 -71223 1.4 NCOA3 NFIB NEUROD1 ZBTB7B CTBP1 GATA3 FOS FOSL2 SMARCE1 ZNF687 GC02P133505 NCKAP5 NCKAP5-IT1
GH02I133497 Enhancer 0.9 ENCODE dbSUPER 0.2 -64.6 -64619 2.4 HDGF PKNOX1 EBF1 BMI1 BATF RELA ATF7 IKZF2 ZNF687 DPF2 NCKAP5 GC02P133505 NCKAP5-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NCKAP5-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NCKAP5-IT1 Gene

Genomic Locations for NCKAP5-IT1 Gene
chr2:133,431,666-133,433,897
(GRCh38/hg38)
Size:
2,232 bases
Orientation:
Minus strand
chr2:134,189,237-134,191,468
(GRCh37/hg19)

Genomic View for NCKAP5-IT1 Gene

Genes around NCKAP5-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCKAP5-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCKAP5-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for NCKAP5-IT1 Gene

Proteins for NCKAP5-IT1 Gene

Post-translational modifications for NCKAP5-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCKAP5-IT1 Gene

Domains & Families for NCKAP5-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCKAP5-IT1 Gene

Function for NCKAP5-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCKAP5-IT1 Gene

Localization for NCKAP5-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCKAP5-IT1 Gene

Pathways & Interactions for NCKAP5-IT1 Gene

SuperPathways for NCKAP5-IT1 Gene

No Data Available

Interacting Proteins for NCKAP5-IT1 Gene

Gene Ontology (GO) - Biological Process for NCKAP5-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCKAP5-IT1 Gene

Drugs & Compounds for NCKAP5-IT1 Gene

No Compound Related Data Available

Transcripts for NCKAP5-IT1 Gene

mRNA/cDNA for NCKAP5-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NCKAP5-IT1 Gene

No ASD Table

Relevant External Links for NCKAP5-IT1 Gene

GeneLoc Exon Structure for
NCKAP5-IT1
ECgene alternative splicing isoforms for
NCKAP5-IT1

Expression for NCKAP5-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NCKAP5-IT1 Gene

genes like me logo Genes that share expression patterns with NCKAP5-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCKAP5-IT1 Gene

Orthologs for NCKAP5-IT1 Gene

Evolution for NCKAP5-IT1 Gene

ENSEMBL:
Gene Tree for NCKAP5-IT1 (if available)
TreeFam:
Gene Tree for NCKAP5-IT1 (if available)

No data available for Orthologs for NCKAP5-IT1 Gene

Paralogs for NCKAP5-IT1 Gene

No data available for Paralogs for NCKAP5-IT1 Gene

Variants for NCKAP5-IT1 Gene

Additional Variant Information for NCKAP5-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCKAP5-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NCKAP5-IT1 Gene

Disorders for NCKAP5-IT1 Gene

No disorders were found for NCKAP5-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NCKAP5-IT1 Gene

Publications for NCKAP5-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for NCKAP5-IT1 Gene

Sources for NCKAP5-IT1 Gene

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