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Aliases for NCKAP5-AS2 Gene
Subcategory (RNA class) for NCKAP5-AS2 Gene
lncRNA
Aliases for NCKAP5-AS2 Gene
External Ids for NCKAP5-AS2 Gene
- HGNC: 54065
- NCBI Entrez Gene: 101928161
- Ensembl: ENSG00000226953
Previous GeneCards Identifiers for NCKAP5-AS2 Gene
- GC02P133265
Summaries for NCKAP5-AS2 Gene
GeneCards Summary for NCKAP5-AS2 Gene
NCKAP5-AS2 (NCKAP5 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for NCKAP5-AS2 Gene
- HGNC (54065)
- NCBI Entrez Gene (101928161)
- Ensembl (ENSG00000226953)
- Open Targets Platform(ENSG00000226953)
- Search for NCKAP5-AS2 at DataMed
- Search for NCKAP5-AS2 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NCKAP5-AS2 Gene
Genomics for NCKAP5-AS2 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for NCKAP5-AS2 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J133265 | Promoter/Enhancer | 1.5 | Ensembl ENCODE CraniofacialAtlas | 250.7 | +1.5 | 1534 | 2.6 | ZNF217 ZIC2 CEBPB CTCF KLF7 ZNF341 SIN3A SMC3 SP2 TBP | NCKAP5-AS2 RF00026-580 NCKAP5 LYPD1 | |
| GH02J133264 | Enhancer | 0.2 | ENCODE | 250.7 | -0.8 | -763 | 0.2 | NCKAP5-AS2 RNU6-579P ENSG00000279512 HSALNG0018991 NCKAP5 LYPD1 | ||
| GH02J133285 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 0.3 | +22.4 | 22366 | 3.5 | CEBPB EP300 ZNF843 PRDM6 SCRT1 MAFF ATF2 DPF2 ZNF133 BCL6B | RNU6-579P ENSG00000272769 NCKAP5-AS2 RF00026-580 NCKAP5 LYPD1 | |
| GH02J133293 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 0.3 | +29.3 | 29312 | 1.9 | FEZF1 ZIC2 ZNF843 PRDM6 REST SCRT1 GLIS1 BHLHE40 ZBTB8A OSR2 | NCKAP5-AS2 RF00026-580 NCKAP5 LYPD1 | |
| GH02J133323 | Enhancer | 1.2 | FANTOM5 Ensembl ENCODE dbSUPER | 0.2 | +61.1 | 61122 | 5.1 | BRCA1 CEBPB REST EP300 RAD21 RFX5 SMC3 STAT3 JUND TBP | RF00026-580 NCKAP5-AS2 NCKAP5 LYPD1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around NCKAP5-AS2 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for NCKAP5-AS2 Gene
Latest Assembly
- chr2:133,264,967-133,292,468
- (GRCh38/hg38)
- Size:
- 27,502 bases
- Orientation:
- Plus strand
Previous Assembly
- chr2:134,023,767-134,042,330
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 18,564 bases
- Orientation:
- Plus strand
- chr2:134,022,540-134,042,334
- (GRCh37/hg19 by Ensembl)
- Size:
- 19,795 bases
- Orientation:
- Plus strand
Genomic View for NCKAP5-AS2 Gene
Genes around NCKAP5-AS2 on UCSC Golden Path with GeneCards custom track
NCKAP5-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2q21.2 by HGNC
- 2q21.2 by Entrez Gene
- 2q21.2 by Ensembl
NCKAP5-AS2 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for NCKAP5-AS2 Gene
Proteins for NCKAP5-AS2 Gene
Post-translational modifications for NCKAP5-AS2 Gene
No Post-translational modifications
No data available for DME Specific Peptides for NCKAP5-AS2 Gene
Domains & Families for NCKAP5-AS2 Gene
Gene Families for NCKAP5-AS2 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NCKAP5-AS2 Gene
Function for NCKAP5-AS2 Gene
Phenotypes From GWAS Catalog for NCKAP5-AS2 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCKAP5-AS2 Gene
Localization for NCKAP5-AS2 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCKAP5-AS2 Gene
Transcripts for NCKAP5-AS2 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for NCKAP5-AS2 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00005A61E3_9606 | lncRNA | 540 | 3 |
Ensembl: ENST00000432414 (view in UCSC) , LNCipedia: lnc-GPR39-4:2, NONCODE: NONHSAT074544.2, |
| URS000075D3F7_9606 | lncRNA | 536 | 2 |
RefSeq: NR_110294, LNCipedia: lnc-GPR39-4:3, |
| URS0000EEFBC3_9606 | lncRNA | 1188 | 1 |
Ensembl: ENST00000670944 (view in UCSC) , |
| URS0000EF6EAD_9606 | lncRNA | 669 | 1 |
Ensembl: ENST00000606428 (view in UCSC) , |
| URS0000EF068C_9606 | lncRNA | 655 | 1 |
Ensembl: ENST00000454699 (view in UCSC) , |
NCKAP5-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for NCKAP5-AS2 Gene
- 3 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for NCKAP5-AS2 Gene
- GeneLoc Exon Structure for
- NCKAP5-AS2
Expression for NCKAP5-AS2 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NCKAP5-AS2
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCKAP5-AS2 Gene
Orthologs for NCKAP5-AS2 Gene
No data available for Orthologs for NCKAP5-AS2 Gene
Paralogs for NCKAP5-AS2 Gene
No data available for Paralogs for NCKAP5-AS2 Gene
Variants for NCKAP5-AS2 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3893403 | CNV | loss | 25118596 |
| esv4378 | OTHER | complex | 18987735 |
| nsv1003964 | CNV | loss | 25217958 |
| nsv1011100 | CNV | loss | 25217958 |
| nsv1071623 | CNV | deletion | 25765185 |
| nsv2933 | CNV | insertion | 18451855 |
| nsv516915 | CNV | gain | 19592680 |
| nsv583152 | CNV | gain | 21841781 |
| nsv834384 | CNV | gain | 17160897 |
Additional Variant Information for NCKAP5-AS2 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- NCKAP5-AS2
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NCKAP5-AS2 Gene
Disorders for NCKAP5-AS2 Gene
Additional Disease Information for NCKAP5-AS2
- Open Targets Platform
- Open Targets Platform
No disorders were found for NCKAP5-AS2 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCKAP5-AS2 Gene
Publications for NCKAP5-AS2 Gene
- Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations. (PMID: 18821565) Lasky-Su J … Faraone SV (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2008) 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
No data available for Mastermind for NCKAP5-AS2 Gene
Products for NCKAP5-AS2 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for NCKAP5-AS2
- Origene Custom Protein Services for NCKAP5-AS2
- Browse OriGene Inhibitory RNA Products For NCKAP5-AS2
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for NCKAP5-AS2
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For NCKAP5-AS2
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for NCKAP5-AS2
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for NCKAP5-AS2
- Search GeneCopoeia for miRNA 3'UTR Target clone products for NCKAP5-AS2
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for NCKAP5-AS2
Sources for NCKAP5-AS2 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB