Aliases for NCKAP5-AS2 Gene

Data sources for NCKAP5-AS2 Gene:

Subcategory (RNA class) for NCKAP5-AS2 Gene

lncRNA

Aliases for NCKAP5-AS2 Gene

External Ids for NCKAP5-AS2 Gene

Previous GeneCards Identifiers for NCKAP5-AS2 Gene

  • GC02P133265

Summaries for NCKAP5-AS2 Gene

GeneCards Summary for NCKAP5-AS2 Gene

NCKAP5-AS2 (NCKAP5 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NCKAP5-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NCKAP5-AS2 Gene

Genomics for NCKAP5-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NCKAP5-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J133265 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 250.7 +1.5 1534 2.6 ZNF217 ZIC2 CEBPB CTCF KLF7 ZNF341 SIN3A SMC3 SP2 TBP NCKAP5-AS2 RF00026-580 NCKAP5 LYPD1
GH02J133264 Enhancer 0.2 ENCODE 250.7 -0.8 -763 0.2 NCKAP5-AS2 RNU6-579P ENSG00000279512 HSALNG0018991 NCKAP5 LYPD1
GH02J133285 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +22.4 22366 3.5 CEBPB EP300 ZNF843 PRDM6 SCRT1 MAFF ATF2 DPF2 ZNF133 BCL6B RNU6-579P ENSG00000272769 NCKAP5-AS2 RF00026-580 NCKAP5 LYPD1
GH02J133293 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +29.3 29312 1.9 FEZF1 ZIC2 ZNF843 PRDM6 REST SCRT1 GLIS1 BHLHE40 ZBTB8A OSR2 NCKAP5-AS2 RF00026-580 NCKAP5 LYPD1
GH02J133323 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +61.1 61122 5.1 BRCA1 CEBPB REST EP300 RAD21 RFX5 SMC3 STAT3 JUND TBP RF00026-580 NCKAP5-AS2 NCKAP5 LYPD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NCKAP5-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NCKAP5-AS2 Gene

Latest Assembly
chr2:133,264,967-133,292,468
(GRCh38/hg38)
Size:
27,502 bases
Orientation:
Plus strand

Previous Assembly
chr2:134,023,767-134,042,330
(GRCh37/hg19 by Entrez Gene)
Size:
18,564 bases
Orientation:
Plus strand

chr2:134,022,540-134,042,334
(GRCh37/hg19 by Ensembl)
Size:
19,795 bases
Orientation:
Plus strand

Genomic View for NCKAP5-AS2 Gene

Genes around NCKAP5-AS2 on UCSC Golden Path with GeneCards custom track
NCKAP5-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NCKAP5-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCKAP5-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCKAP5-AS2 Gene

Proteins for NCKAP5-AS2 Gene

Post-translational modifications for NCKAP5-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCKAP5-AS2 Gene

Domains & Families for NCKAP5-AS2 Gene

Gene Families for NCKAP5-AS2 Gene

genes like me logo Genes that share domains with NCKAP5-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NCKAP5-AS2 Gene

Function for NCKAP5-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCKAP5-AS2 Gene

Localization for NCKAP5-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCKAP5-AS2 Gene

Pathways & Interactions for NCKAP5-AS2 Gene

PathCards logo

SuperPathways for NCKAP5-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NCKAP5-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NCKAP5-AS2 Gene

Drugs & Compounds for NCKAP5-AS2 Gene

No Compound Related Data Available

Transcripts for NCKAP5-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NCKAP5-AS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005A61E3_9606 lncRNA 540 3

Ensembl: ENST00000432414 (view in UCSC) ,

LNCipedia: lnc-GPR39-4:2,

NONCODE: NONHSAT074544.2,

URS000075D3F7_9606 lncRNA 536 2

RefSeq: NR_110294,

LNCipedia: lnc-GPR39-4:3,

URS0000EEFBC3_9606 lncRNA 1188 1

Ensembl: ENST00000670944 (view in UCSC) ,

URS0000EF6EAD_9606 lncRNA 669 1

Ensembl: ENST00000606428 (view in UCSC) ,

URS0000EF068C_9606 lncRNA 655 1

Ensembl: ENST00000454699 (view in UCSC) ,

NCKAP5-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NCKAP5-AS2 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NCKAP5-AS2 Gene

No ASD Table

Relevant External Links for NCKAP5-AS2 Gene

GeneLoc Exon Structure for
NCKAP5-AS2

Expression for NCKAP5-AS2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NCKAP5-AS2

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCKAP5-AS2 Gene

Orthologs for NCKAP5-AS2 Gene

Evolution for NCKAP5-AS2 Gene

ENSEMBL:
Gene Tree for NCKAP5-AS2 (if available)
TreeFam:
Gene Tree for NCKAP5-AS2 (if available)

No data available for Orthologs for NCKAP5-AS2 Gene

Paralogs for NCKAP5-AS2 Gene

No data available for Paralogs for NCKAP5-AS2 Gene

Variants for NCKAP5-AS2 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for NCKAP5-AS2 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for NCKAP5-AS2 Gene

Variant ID Type Subtype PubMed ID
esv3893403 CNV loss 25118596
esv4378 OTHER complex 18987735
nsv1003964 CNV loss 25217958
nsv1011100 CNV loss 25217958
nsv1071623 CNV deletion 25765185
nsv2933 CNV insertion 18451855
nsv516915 CNV gain 19592680
nsv583152 CNV gain 21841781
nsv834384 CNV gain 17160897

Additional Variant Information for NCKAP5-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCKAP5-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NCKAP5-AS2 Gene

Disorders for NCKAP5-AS2 Gene

Additional Disease Information for NCKAP5-AS2

Open Targets Platform
Open Targets Platform

No disorders were found for NCKAP5-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCKAP5-AS2 Gene

Publications for NCKAP5-AS2 Gene

  1. Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations. (PMID: 18821565) Lasky-Su J … Faraone SV (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2008) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for NCKAP5-AS2 Gene

Products for NCKAP5-AS2 Gene

Sources for NCKAP5-AS2 Gene