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NCKAP5-AS2 (NCKAP5 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH02J133265 | Promoter/Enhancer | 1.5 | Ensembl ENCODE CraniofacialAtlas | 250.7 | +1.5 | 1534 | 2.6 | ZNF217 ZIC2 CEBPB CTCF KLF7 ZNF341 SIN3A SMC3 SP2 TBP | NCKAP5-AS2 RF00026-580 NCKAP5 LYPD1 | |
GH02J133264 | Enhancer | 0.2 | ENCODE | 250.7 | -0.8 | -763 | 0.2 | NCKAP5-AS2 RNU6-579P ENSG00000279512 HSALNG0018991 NCKAP5 LYPD1 | ||
GH02J133285 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 0.3 | +22.4 | 22366 | 3.5 | CEBPB EP300 ZNF843 PRDM6 SCRT1 MAFF ATF2 DPF2 ZNF133 BCL6B | RNU6-579P ENSG00000272769 NCKAP5-AS2 RF00026-580 NCKAP5 LYPD1 | |
GH02J133293 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 0.3 | +29.3 | 29312 | 1.9 | FEZF1 ZIC2 ZNF843 PRDM6 REST SCRT1 GLIS1 BHLHE40 ZBTB8A OSR2 | NCKAP5-AS2 RF00026-580 NCKAP5 LYPD1 | |
GH02J133323 | Enhancer | 1.2 | FANTOM5 Ensembl ENCODE dbSUPER | 0.2 | +61.1 | 61122 | 5.1 | BRCA1 CEBPB REST EP300 RAD21 RFX5 SMC3 STAT3 JUND TBP | RF00026-580 NCKAP5-AS2 NCKAP5 LYPD1 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS00005A61E3_9606 | lncRNA | 540 | 3 |
Ensembl: ENST00000432414 (view in UCSC) , LNCipedia: lnc-GPR39-4:2, NONCODE: NONHSAT074544.2, |
URS000075D3F7_9606 | lncRNA | 536 | 2 |
RefSeq: NR_110294, LNCipedia: lnc-GPR39-4:3, |
URS0000EEFBC3_9606 | lncRNA | 1188 | 1 |
Ensembl: ENST00000670944 (view in UCSC) , |
URS0000EF6EAD_9606 | lncRNA | 669 | 1 |
Ensembl: ENST00000606428 (view in UCSC) , |
URS0000EF068C_9606 | lncRNA | 655 | 1 |
Ensembl: ENST00000454699 (view in UCSC) , |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv3893403 | CNV | loss | 25118596 |
esv4378 | OTHER | complex | 18987735 |
nsv1003964 | CNV | loss | 25217958 |
nsv1011100 | CNV | loss | 25217958 |
nsv1071623 | CNV | deletion | 25765185 |
nsv2933 | CNV | insertion | 18451855 |
nsv516915 | CNV | gain | 19592680 |
nsv583152 | CNV | gain | 21841781 |
nsv834384 | CNV | gain | 17160897 |
No disorders were found for NCKAP5-AS2 Gene.