Aliases for NCF4-AS1 Gene

Subcategory (RNA class) for NCF4-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for NCF4-AS1 Gene

  • NCF4 Antisense RNA 1 2 3 5
  • NCF4-AS1 2 5 165
  • NONHSAG033849.2 91
  • HSALNG0135254 164
  • CTA-833B7.2 2

External Ids for NCF4-AS1 Gene

Summaries for NCF4-AS1 Gene

GeneCards Summary for NCF4-AS1 Gene

NCF4-AS1 (NCF4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with NCF4-AS1 include Granulomatous Disease, Chronic, Autosomal Recessive, Cytochrome B-Positive, Type Iii and Chronic Granulomatous Disease.

Additional gene information for NCF4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NCF4-AS1 Gene

Genomics for NCF4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NCF4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J036870 Promoter/Enhancer 1 EPDnew Ensembl ENCODE 600.7 +0.0 45 0.8 EGR1 DPF2 FOS SMARCE1 FOSL2 NCF4-AS1 NCF4 CSF2RB
GH22J036871 Enhancer 0.9 Ensembl ENCODE dbSUPER 600.7 -1.3 -1338 1.6 ZFX USF1 ZBTB48 NBN FOS JUND RAD21 ZMYM3 FOSL2 CTCF NCF4-AS1 PVALB NCF4 LOC105373022 CSF2RB
GH22J037014 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.8 -150.2 -150227 12.5 HNRNPL CREB1 GATAD2A CTCF PRDM10 ZNF629 IKZF1 ZNF692 POLR2A RCOR2 MPST TST EIF3D RBFOX2 RPS15AP38 KCTD17 ENSG00000100101 GGA1 ENSG00000231467 TMPRSS6
GH22J036920 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.9 -51.4 -51384 3.3 ZBTB33 TEAD4 LARP7 RELA ZSCAN4 IKZF2 TRIM22 PKNOX1 MNT EED CSF2RB NCF4-AS1 NCF4 ENSG00000229971 MPST LOC105373023 HSALNG0135257 piR-50437-440 TEX33
GH22J036775 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.3 +94.3 94346 2.6 BRCA1 SP1 CREB1 PRDM10 ZNF692 FOS GABPA DDX20 ZNF143 RFX1 IFT27 lnc-IFT27-3 PVALB ENSG00000234979 ENSG00000229971 NCF4 NCF4-AS1 TEX33 IL2RB ENSG00000235237
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NCF4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NCF4-AS1 Gene

Genomic Locations for NCF4-AS1 Gene
chr22:36,847,372-36,870,446
(GRCh38/hg38)
Size:
23,075 bases
Orientation:
Minus strand
chr22:37,243,415-37,266,483
(GRCh37/hg19)
Size:
23,069 bases
Orientation:
Minus strand

Genomic View for NCF4-AS1 Gene

Genes around NCF4-AS1 on UCSC Golden Path with GeneCards custom track
NCF4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
NCF4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCF4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCF4-AS1 Gene

Proteins for NCF4-AS1 Gene

Post-translational modifications for NCF4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCF4-AS1 Gene

Domains & Families for NCF4-AS1 Gene

Gene Families for NCF4-AS1 Gene

genes like me logo Genes that share domains with NCF4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NCF4-AS1 Gene

Function for NCF4-AS1 Gene

Phenotypes From GWAS Catalog for NCF4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCF4-AS1 Gene

Localization for NCF4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCF4-AS1 Gene

Pathways & Interactions for NCF4-AS1 Gene

PathCards logo

SuperPathways for NCF4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NCF4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NCF4-AS1 Gene

Drugs & Compounds for NCF4-AS1 Gene

No Compound Related Data Available

Transcripts for NCF4-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NCF4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000077A884_9606 lncRNA 995 3

Ensembl: ENST00000619915 (view in UCSC) ,

LNCipedia: NCF4-AS1:12,

NONCODE: NONHSAT085132.2,

URS00000D8667_9606 lncRNA 511 3

Ensembl: ENST00000431290 (view in UCSC) ,

LNCipedia: NCF4-AS1:13,

NONCODE: NONHSAT085133.2,

URS0000BC44BC_9606 lncRNA 997 2

HGNC: 40393,

RefSeq: NR_147197,

URS0000D599C5_9606 lncRNA 577 2

LncBook: HSALNT0277575,

LNCipedia: NCF4-AS1:9,

URS00009AECCC_9606 lncRNA 1426 1

NONCODE: NONHSAT192890.1,

NCF4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NCF4-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NCF4-AS1 Gene

No ASD Table

Relevant External Links for NCF4-AS1 Gene

GeneLoc Exon Structure for
NCF4-AS1

Expression for NCF4-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCF4-AS1 Gene

Orthologs for NCF4-AS1 Gene

Evolution for NCF4-AS1 Gene

ENSEMBL:
Gene Tree for NCF4-AS1 (if available)
TreeFam:
Gene Tree for NCF4-AS1 (if available)

No data available for Orthologs for NCF4-AS1 Gene

Paralogs for NCF4-AS1 Gene

No data available for Paralogs for NCF4-AS1 Gene

Variants for NCF4-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for NCF4-AS1 Gene

SNP ID Clinical significance and condition Chr 22 pos Variation AA Info Type
641455 Uncertain Significance: Granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type III 36,864,113(-) G/T MISSENSE_VARIANT
642515 Uncertain Significance: Granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type III 36,864,923(-) T/A MISSENSE_VARIANT
645193 Uncertain Significance: Granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type III 36,864,930(-) C/A SYNONYMOUS_VARIANT
657545 Uncertain Significance: Granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type III 36,867,457(-) A/G MISSENSE_VARIANT
661353 Uncertain Significance: Granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type III 36,864,946(-) G/A MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for NCF4-AS1 Gene

Additional Variant Information for NCF4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCF4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NCF4-AS1 Gene

Disorders for NCF4-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for NCF4-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type iii
  • cdg3
chronic granulomatous disease
  • granulomatous disease, chronic, x-linked
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with NCF4-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NCF4-AS1 Gene

Publications for NCF4-AS1 Gene

  1. Differential expression profile of long noncoding RNAs in human chorionic villi of early recurrent miscarriage. (PMID: 27836685) Wang L … Tang L (Clinica chimica acta; international journal of clinical chemistry 2017) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for NCF4-AS1 Gene

Sources for NCF4-AS1 Gene