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Aliases for NCBP2-AS2 Gene

Subcategory (RNA class) for NCBP2-AS2 Gene

lncRNA

Aliases for NCBP2-AS2 Gene

  • NCBP2 Antisense RNA 2 (Head To Head) 2 3 5
  • NCBP2 Antisense Gene Protein 2 4
  • NCBP2 Antisense RNA 2 4

External Ids for NCBP2-AS2 Gene

ORGUL Members for NCBP2-AS2 Gene

Previous GeneCards Identifiers for NCBP2-AS2 Gene

  • GC03P196671

Summaries for NCBP2-AS2 Gene

GeneCards Summary for NCBP2-AS2 Gene

NCBP2-AS2 (NCBP2 Antisense RNA 2 (Head To Head)) is a Protein Coding gene, and is affiliated with the lncRNA class.

Additional gene information for NCBP2-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCBP2-AS2 Gene

Genomics for NCBP2-AS2 Gene

GeneHancer (GH) Regulatory Elements for NCBP2-AS2 Gene

Promoters and enhancers for NCBP2-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I196938 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 585.8 -0.2 -246 7.3 CLOCK MLX DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC NCBP2-AS2 NCBP2 PIGZ SENP5 NCBP2-AS1
GH03I196866 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 29.1 -74.6 -74577 2.5 HDGF SMAD1 ARNT ARID4B SIN3A YY1 POLR2B ZNF207 ZNF143 SP5 SENP5 NCBP2-AS2 RPL36P7 NCBP2 NCBP2-AS1 CEP19 GC03M196873
GH03I196968 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.9 +26.8 26769 2.4 PKNOX1 SIN3A ZNF48 ZNF766 GLIS2 ZNF207 ZNF143 ATF7 RUNX3 REST PIGZ SDHAP1 ENSG00000234742 UBXN7 LOC220729 LRCH3 RPL35A NCBP2-AS1 NCBP2-AS2 NRROS
GH03I196676 Enhancer 0.2 dbSUPER 5.8 -264.9 -264898 2 NCBP2-AS2 PIGZ GC03M196709 PIGX
GH03I196960 Enhancer 1.1 ENCODE dbSUPER 0.4 +19.8 19779 3.1 ELF3 FOXA2 MLX ARID4B DMAP1 RARA SLC30A9 CREM MIXL1 PAF1 PIGZ NCBP2-AS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NCBP2-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NCBP2-AS2 Gene

Genomic Locations for NCBP2-AS2 Gene
chr3:196,942,623-196,944,013
(GRCh38/hg38)
Size:
1,391 bases
Orientation:
Plus strand
chr3:196,669,494-196,670,884
(GRCh37/hg19)

Genomic View for NCBP2-AS2 Gene

Genes around NCBP2-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCBP2-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCBP2-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCBP2-AS2 Gene

Proteins for NCBP2-AS2 Gene

  • Protein details for NCBP2-AS2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q69YL0-NCAS2_HUMAN
    Recommended name:
    Uncharacterized protein NCBP2-AS2
    Protein Accession:
    Q69YL0

    Protein attributes for NCBP2-AS2 Gene

    Size:
    99 amino acids
    Molecular mass:
    10891 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NCBP2-AS2 Gene

Post-translational modifications for NCBP2-AS2 Gene

No Post-translational modifications

Other Protein References for NCBP2-AS2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NCBP2-AS2 Gene

Domains & Families for NCBP2-AS2 Gene

Gene Families for NCBP2-AS2 Gene

Human Protein Atlas (HPA):
  • Predicted secreted proteins

Protein Domains for NCBP2-AS2 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NCBP2-AS2: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCBP2-AS2 Gene

Function for NCBP2-AS2 Gene

Phenotypes From GWAS Catalog for NCBP2-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCBP2-AS2 Gene

Localization for NCBP2-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCBP2-AS2 Gene

Pathways & Interactions for NCBP2-AS2 Gene

SuperPathways for NCBP2-AS2 Gene

No Data Available

Interacting Proteins for NCBP2-AS2 Gene

Selected Interacting proteins: Q69YL0-NCAS2_HUMAN for NCBP2-AS2 Gene via IID

Gene Ontology (GO) - Biological Process for NCBP2-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCBP2-AS2 Gene

Drugs & Compounds for NCBP2-AS2 Gene

No Compound Related Data Available

Transcripts for NCBP2-AS2 Gene

mRNA/cDNA for NCBP2-AS2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for NCBP2-AS2 Gene

No ASD Table

Relevant External Links for NCBP2-AS2 Gene

GeneLoc Exon Structure for
NCBP2-AS2
ECgene alternative splicing isoforms for
NCBP2-AS2

Expression for NCBP2-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NCBP2-AS2 Gene

Protein differential expression in normal tissues from HIPED for NCBP2-AS2 Gene

This gene is overexpressed in Stomach (28.4), Gallbladder (8.1), and Placenta (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NCBP2-AS2 Gene



Protein tissue co-expression partners for NCBP2-AS2 Gene

genes like me logo Genes that share expression patterns with NCBP2-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCBP2-AS2 Gene

Orthologs for NCBP2-AS2 Gene

Evolution for NCBP2-AS2 Gene

ENSEMBL:
Gene Tree for NCBP2-AS2 (if available)
TreeFam:
Gene Tree for NCBP2-AS2 (if available)

No data available for Orthologs for NCBP2-AS2 Gene

Paralogs for NCBP2-AS2 Gene

No data available for Paralogs for NCBP2-AS2 Gene

Variants for NCBP2-AS2 Gene

Sequence variations from dbSNP and Humsavar for NCBP2-AS2 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000108563 -- 196,941,161(+) G/A upstream_transcript_variant
rs1000807537 -- 196,940,812(+) T/G upstream_transcript_variant
rs1000859702 -- 196,941,070(+) T/G upstream_transcript_variant
rs1001237265 -- 196,941,428(+) C/G upstream_transcript_variant
rs1001268638 -- 196,941,693(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NCBP2-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv593086 CNV loss 21841781
nsv1003135 CNV gain 25217958
esv3599293 CNV gain 21293372
esv2763775 CNV gain+loss 21179565

Additional Variant Information for NCBP2-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCBP2-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NCBP2-AS2 Gene

Disorders for NCBP2-AS2 Gene

Additional Disease Information for NCBP2-AS2

No disorders were found for NCBP2-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCBP2-AS2 Gene

Publications for NCBP2-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. N-terminome analysis of the human mitochondrial proteome. (PMID: 25944712) Vaca Jacome AS … Carapito C (Proteomics 2015) 4 58
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 58
  4. An important role for CDK2 in G1 to S checkpoint activation and DNA damage response in human embryonic stem cells. (PMID: 21319273) Neganova I … Lako M (Stem cells (Dayton, Ohio) 2011) 3 58
  5. The full-ORF clone resource of the German cDNA Consortium. (PMID: 17974005) Bechtel S … Schupp I (BMC genomics 2007) 4 58

Products for NCBP2-AS2 Gene

Sources for NCBP2-AS2 Gene

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