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Aliases for NCBP2-AS1 Gene

Subcategory (RNA class) for NCBP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NCBP2-AS1 Gene

  • NCBP2 Antisense RNA 1 2 3 5
  • NCBP2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NCBP2-AS1 Gene

Previous GeneCards Identifiers for NCBP2-AS1 Gene

  • GC00U933331
  • GC03P196667

Summaries for NCBP2-AS1 Gene

GeneCards Summary for NCBP2-AS1 Gene

NCBP2-AS1 (NCBP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NCBP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCBP2-AS1 Gene

Genomics for NCBP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for NCBP2-AS1 Gene

Promoters and enhancers for NCBP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I196968 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.7 +29.5 29515 2.4 PKNOX1 SIN3A ZNF48 ZNF766 GLIS2 ZNF207 ZNF143 ATF7 RUNX3 REST PIGZ SDHAP1 ENSG00000234742 UBXN7 LOC220729 LRCH3 RPL35A NCBP2-AS1 NCBP2-AS2 NRROS
GH03I196938 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.6 +2.5 2500 7.3 CLOCK MLX DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC NCBP2-AS2 NCBP2 PIGZ SENP5 NCBP2-AS1
GH03I196337 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.4 -600.5 -600477 4.4 HDGF PKNOX1 ARNT SIN3A YY1 POLR2B ZNF766 E2F8 FOS SMARCB1 TM4SF19 TM4SF19-TCTEX1D2 SDHAP1 LINC00969 UBXN7 SDHAP2 ENSG00000230732 ACAP2 ENSG00000260261 ENSG00000231443
GH03I196866 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11 -71.8 -71831 2.5 HDGF SMAD1 ARNT ARID4B SIN3A YY1 POLR2B ZNF207 ZNF143 SP5 SENP5 NCBP2-AS2 RPL36P7 NCBP2 NCBP2-AS1 CEP19 GC03M196873
GH03I196567 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.8 -371.1 -371088 2.6 HDGF SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B CBX5 FBXO45 WDR53 SDHAP2 SDHAP1 RNF168 LINC00969 MIR570 CEP19 LINC01063 NCBP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NCBP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NCBP2-AS1 Gene

Genomic Locations for NCBP2-AS1 Gene
chr3:196,939,877-196,942,534
(GRCh38/hg38)
Size:
2,658 bases
Orientation:
Plus strand
chr3:196,666,748-196,669,405
(GRCh37/hg19)

Genomic View for NCBP2-AS1 Gene

Genes around NCBP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCBP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCBP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for NCBP2-AS1 Gene

Proteins for NCBP2-AS1 Gene

Post-translational modifications for NCBP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCBP2-AS1 Gene

Domains & Families for NCBP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCBP2-AS1 Gene

Function for NCBP2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCBP2-AS1 Gene

Localization for NCBP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCBP2-AS1 Gene

Pathways & Interactions for NCBP2-AS1 Gene

SuperPathways for NCBP2-AS1 Gene

No Data Available

Interacting Proteins for NCBP2-AS1 Gene

Gene Ontology (GO) - Biological Process for NCBP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCBP2-AS1 Gene

Drugs & Compounds for NCBP2-AS1 Gene

No Compound Related Data Available

Transcripts for NCBP2-AS1 Gene

mRNA/cDNA for NCBP2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NCBP2-AS1 Gene

No ASD Table

Relevant External Links for NCBP2-AS1 Gene

GeneLoc Exon Structure for
NCBP2-AS1
ECgene alternative splicing isoforms for
NCBP2-AS1

Expression for NCBP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NCBP2-AS1 Gene

genes like me logo Genes that share expression patterns with NCBP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCBP2-AS1 Gene

Orthologs for NCBP2-AS1 Gene

Evolution for NCBP2-AS1 Gene

ENSEMBL:
Gene Tree for NCBP2-AS1 (if available)
TreeFam:
Gene Tree for NCBP2-AS1 (if available)

No data available for Orthologs for NCBP2-AS1 Gene

Paralogs for NCBP2-AS1 Gene

No data available for Paralogs for NCBP2-AS1 Gene

Variants for NCBP2-AS1 Gene

Additional Variant Information for NCBP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCBP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NCBP2-AS1 Gene

Disorders for NCBP2-AS1 Gene

Additional Disease Information for NCBP2-AS1

No disorders were found for NCBP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCBP2-AS1 Gene

Publications for NCBP2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for NCBP2-AS1 Gene

Sources for NCBP2-AS1 Gene

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