Aliases for NCAM1-AS1 Gene

Data sources for NCAM1-AS1 Gene:

Subcategory (RNA class) for NCAM1-AS1 Gene

lncRNA

Aliases for NCAM1-AS1 Gene

External Ids for NCAM1-AS1 Gene

Previous GeneCards Identifiers for NCAM1-AS1 Gene

  • GC11M113145

Summaries for NCAM1-AS1 Gene

GeneCards Summary for NCAM1-AS1 Gene

NCAM1-AS1 (NCAM1 Antisense RNA1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NCAM1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NCAM1-AS1 Gene

Genomics for NCAM1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NCAM1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J113273 Promoter/Enhancer 0.7 EPDnew dbSUPER 250.7 +1.1 1141 0.1 RCOR1 GATA2 CHD2 NCAM1-AS1 TTC12 HSALNG0087231 NCAM1
GH11J113274 Enhancer 0.6 Ensembl dbSUPER 250.7 +0.3 321 0.2 ZIC2 CTCF ZNF143 NCAM1-AS1 TTC12 HSALNG0087231 NCAM1
GH11J113187 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.2 +84.2 84221 8.4 FEZF1 IKZF1 VEZF1 ZNF316 FOSL1 PRDM10 NFE2 EHMT2 EP400 MAFG NCAM1-AS1 NCAM1 HSALNG0087231 TTC12
GH11J113183 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +91.3 91321 3.4 CEBPA CEBPB CUX1 MAX EP300 RFX5 STAT3 JUND USF2 ATF2 NCAM1 NCAM1-AS1 HSALNG0087231 TTC12
GH11J112611 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 9.9 +660.6 660622 8 EBF1 JUND BATF RFX1 GLIS1 SP1 POLR2A PRDM10 RAD21 EP300 NCAM1 NCAM1-AS1 HSALNG0087208 ENSG00000285769 LINC02763 PLET1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NCAM1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NCAM1-AS1 Gene

Latest Assembly
chr11:113,262,732-113,275,022
(GRCh38/hg38)
Size:
12,291 bases
Orientation:
Minus strand

Previous Assembly
chr11:113,140,254-113,144,623
(GRCh37/hg19 by Entrez Gene)
Size:
4,370 bases
Orientation:
Minus strand

chr11:113,140,254-113,144,623
(GRCh37/hg19 by Ensembl)
Size:
4,370 bases
Orientation:
Minus strand

Genomic View for NCAM1-AS1 Gene

Genes around NCAM1-AS1 on UCSC Golden Path with GeneCards custom track
NCAM1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NCAM1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCAM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCAM1-AS1 Gene

Proteins for NCAM1-AS1 Gene

Post-translational modifications for NCAM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCAM1-AS1 Gene

Domains & Families for NCAM1-AS1 Gene

Gene Families for NCAM1-AS1 Gene

genes like me logo Genes that share domains with NCAM1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NCAM1-AS1 Gene

Function for NCAM1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCAM1-AS1 Gene

Localization for NCAM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCAM1-AS1 Gene

Pathways & Interactions for NCAM1-AS1 Gene

PathCards logo

SuperPathways for NCAM1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NCAM1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NCAM1-AS1 Gene

Drugs & Compounds for NCAM1-AS1 Gene

No Compound Related Data Available

Transcripts for NCAM1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NCAM1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B7BD_9606 lncRNA 713 4

RefSeq: NR_034101,

LncBook: HSALNT0181278,

LNCipedia: NCAM1-AS1:3,

NONCODE: NONHSAT024239.2,

URS0000402F59_9606 lncRNA 1083 3

Ensembl: ENST00000526229 (view in UCSC) ,

LncBook: HSALNT0181279,

LNCipedia: NCAM1-AS1:2,

URS0000EF5ADA_9606 lncRNA 5727 1

Ensembl: ENST00000662696 (view in UCSC) ,

URS0000EEE200_9606 lncRNA 4237 1

Ensembl: ENST00000533638 (view in UCSC) ,

URS0000EEEE93_9606 lncRNA 1695 1

Ensembl: ENST00000661168 (view in UCSC) ,

NCAM1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NCAM1-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NCAM1-AS1 Gene

No ASD Table

Relevant External Links for NCAM1-AS1 Gene

GeneLoc Exon Structure for
NCAM1-AS1

Expression for NCAM1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NCAM1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NCAM1-AS1

genes like me logo Genes that share expression patterns with NCAM1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCAM1-AS1 Gene

Orthologs for NCAM1-AS1 Gene

Evolution for NCAM1-AS1 Gene

ENSEMBL:
Gene Tree for NCAM1-AS1 (if available)
TreeFam:
Gene Tree for NCAM1-AS1 (if available)

No data available for Orthologs for NCAM1-AS1 Gene

Paralogs for NCAM1-AS1 Gene

No data available for Paralogs for NCAM1-AS1 Gene

Variants for NCAM1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for NCAM1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for NCAM1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv483080 CNV loss 15286789

Additional Variant Information for NCAM1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCAM1-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NCAM1-AS1 Gene

Disorders for NCAM1-AS1 Gene

Additional Disease Information for NCAM1-AS1

No disorders were found for NCAM1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCAM1-AS1 Gene

Publications for NCAM1-AS1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3
  2. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3
  3. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud PJ … BRIGHT Consortium (American journal of human genetics 2009) 3

Products for NCAM1-AS1 Gene

Sources for NCAM1-AS1 Gene