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Aliases for NCAM1-AS1 Gene
Subcategory (RNA class) for NCAM1-AS1 Gene
lncRNA
Aliases for NCAM1-AS1 Gene
External Ids for NCAM1-AS1 Gene
- HGNC: 48675
- NCBI Entrez Gene: 100288346
- Ensembl: ENSG00000227487
Previous GeneCards Identifiers for NCAM1-AS1 Gene
- GC11M113145
Summaries for NCAM1-AS1 Gene
GeneCards Summary for NCAM1-AS1 Gene
NCAM1-AS1 (NCAM1 Antisense RNA1) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for NCAM1-AS1 Gene
- HGNC (48675)
- NCBI Entrez Gene (100288346)
- Ensembl (ENSG00000227487)
- Open Targets Platform(ENSG00000227487)
- Search for NCAM1-AS1 at DataMed
- Search for NCAM1-AS1 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NCAM1-AS1 Gene
Genomics for NCAM1-AS1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for NCAM1-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J113273 | Promoter/Enhancer | 0.7 | EPDnew dbSUPER | 250.7 | +1.1 | 1141 | 0.1 | RCOR1 GATA2 CHD2 | NCAM1-AS1 TTC12 HSALNG0087231 NCAM1 | |
| GH11J113274 | Enhancer | 0.6 | Ensembl dbSUPER | 250.7 | +0.3 | 321 | 0.2 | ZIC2 CTCF ZNF143 | NCAM1-AS1 TTC12 HSALNG0087231 NCAM1 | |
| GH11J113187 | Enhancer | 1.6 | FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 10.2 | +84.2 | 84221 | 8.4 | FEZF1 IKZF1 VEZF1 ZNF316 FOSL1 PRDM10 NFE2 EHMT2 EP400 MAFG | NCAM1-AS1 NCAM1 HSALNG0087231 TTC12 | |
| GH11J113183 | Enhancer | 1.2 | FANTOM5 Ensembl ENCODE dbSUPER | 10.7 | +91.3 | 91321 | 3.4 | CEBPA CEBPB CUX1 MAX EP300 RFX5 STAT3 JUND USF2 ATF2 | NCAM1 NCAM1-AS1 HSALNG0087231 TTC12 | |
| GH11J112611 | Enhancer | 0.9 | Ensembl ENCODE CraniofacialAtlas | 9.9 | +660.6 | 660622 | 8 | EBF1 JUND BATF RFX1 GLIS1 SP1 POLR2A PRDM10 RAD21 EP300 | NCAM1 NCAM1-AS1 HSALNG0087208 ENSG00000285769 LINC02763 PLET1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around NCAM1-AS1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for NCAM1-AS1 Gene
Latest Assembly
- chr11:113,262,732-113,275,022
- (GRCh38/hg38)
- Size:
- 12,291 bases
- Orientation:
- Minus strand
Previous Assembly
- chr11:113,140,254-113,144,623
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 4,370 bases
- Orientation:
- Minus strand
- chr11:113,140,254-113,144,623
- (GRCh37/hg19 by Ensembl)
- Size:
- 4,370 bases
- Orientation:
- Minus strand
Genomic View for NCAM1-AS1 Gene
Genes around NCAM1-AS1 on UCSC Golden Path with GeneCards custom track
NCAM1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q23.2 by HGNC
- 11q23.2 by Entrez Gene
- 11q23.2 by Ensembl
NCAM1-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for NCAM1-AS1 Gene
Proteins for NCAM1-AS1 Gene
Post-translational modifications for NCAM1-AS1 Gene
No Post-translational modifications
No data available for DME Specific Peptides for NCAM1-AS1 Gene
Domains & Families for NCAM1-AS1 Gene
Gene Families for NCAM1-AS1 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NCAM1-AS1 Gene
Function for NCAM1-AS1 Gene
Phenotypes From GWAS Catalog for NCAM1-AS1 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCAM1-AS1 Gene
Localization for NCAM1-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCAM1-AS1 Gene
Transcripts for NCAM1-AS1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for NCAM1-AS1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075B7BD_9606 | lncRNA | 713 | 4 |
RefSeq: NR_034101, LncBook: HSALNT0181278, LNCipedia: NCAM1-AS1:3, NONCODE: NONHSAT024239.2, |
| URS0000402F59_9606 | lncRNA | 1083 | 3 |
Ensembl: ENST00000526229 (view in UCSC) , LncBook: HSALNT0181279, LNCipedia: NCAM1-AS1:2, |
| URS0000EF5ADA_9606 | lncRNA | 5727 | 1 |
Ensembl: ENST00000662696 (view in UCSC) , |
| URS0000EEE200_9606 | lncRNA | 4237 | 1 |
Ensembl: ENST00000533638 (view in UCSC) , |
| URS0000EEEE93_9606 | lncRNA | 1695 | 1 |
Ensembl: ENST00000661168 (view in UCSC) , |
NCAM1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for NCAM1-AS1 Gene
- 3 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for NCAM1-AS1 Gene
- GeneLoc Exon Structure for
- NCAM1-AS1
Expression for NCAM1-AS1 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NCAM1-AS1
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCAM1-AS1 Gene
Orthologs for NCAM1-AS1 Gene
No data available for Orthologs for NCAM1-AS1 Gene
Paralogs for NCAM1-AS1 Gene
No data available for Paralogs for NCAM1-AS1 Gene
Variants for NCAM1-AS1 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for NCAM1-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- NCAM1-AS1
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NCAM1-AS1 Gene
Disorders for NCAM1-AS1 Gene
Additional Disease Information for NCAM1-AS1
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for NCAM1-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCAM1-AS1 Gene
Publications for NCAM1-AS1 Gene
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3
- Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3
- Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud PJ … BRIGHT Consortium (American journal of human genetics 2009) 3
Products for NCAM1-AS1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for NCAM1-AS1
- Origene Custom Protein Services for NCAM1-AS1
- Browse OriGene Inhibitory RNA Products For NCAM1-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for NCAM1-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For NCAM1-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for NCAM1-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for NCAM1-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for NCAM1-AS1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for NCAM1-AS1
Sources for NCAM1-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB