Aliases for NBPF5P Gene

Aliases for NBPF5P Gene

  • NBPF Member 5, Pseudogene 2 3 5
  • NBPF5 3 4
  • Neuroblastoma Breakpoint Family Member 5, Pseudogene 3
  • Putative Neuroblastoma Breakpoint Family Member 5 4
  • Neuroblastoma Breakpoint Family, Member 5 2
  • DKFZp434D177-Like 3
  • NBPF5P 5

External Ids for NBPF5P Gene

Previous HGNC Symbols for NBPF5P Gene

  • NBPF5

Previous GeneCards Identifiers for NBPF5P Gene

  • GC01P108922

Summaries for NBPF5P Gene

GeneCards Summary for NBPF5P Gene

NBPF5P (NBPF Member 5, Pseudogene) is a Pseudogene. Diseases associated with NBPF5P include Neuroblastoma.

Additional gene information for NBPF5P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NBPF5P Gene

Genomics for NBPF5P Gene

Genomic Locations for NBPF5P Gene

Genomic Locations for NBPF5P Gene
chr1:108,375,838-108,410,814
(GRCh38/hg38)
Size:
34,977 bases
Orientation:
Plus strand
chr1:108,918,460-108,953,436
(GRCh37/hg19)
Size:
34,977 bases
Orientation:
Plus strand

Genomic View for NBPF5P Gene

Genes around NBPF5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NBPF5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NBPF5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NBPF5P Gene

No data available for GeneHancer (GH) Regulatory Elements for NBPF5P Gene

Proteins for NBPF5P Gene

  • Protein details for NBPF5P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86XG9-NBPF5_HUMAN
    Recommended name:
    Putative neuroblastoma breakpoint family member 5
    Protein Accession:
    Q86XG9

    Protein attributes for NBPF5P Gene

    Size:
    351 amino acids
    Molecular mass:
    40546 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH43522.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
    Miscellaneous:
    • Encoded by one of the numerous copies of NBPF genes clustered in the p36, p12 and q21 region of the chromosome 1.

neXtProt entry for NBPF5P Gene

Post-translational modifications for NBPF5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for NBPF5P Gene

Domains & Families for NBPF5P Gene

Gene Families for NBPF5P Gene

HGNC:

Protein Domains for NBPF5P Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for NBPF5P Gene

GenScript: Design optimal peptide antigens:
  • Neuroblastoma breakpoint family member 5 (NBPF5_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q86XG9

UniProtKB/Swiss-Prot:

NBPF5_HUMAN :
  • Belongs to the NBPF family.
Family:
  • Belongs to the NBPF family.
genes like me logo Genes that share domains with NBPF5P: view

Function for NBPF5P Gene

Phenotypes for NBPF5P Gene

genes like me logo Genes that share phenotypes with NBPF5P: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NBPF5P Gene

Localization for NBPF5P Gene

Subcellular locations from UniProtKB/Swiss-Prot for NBPF5P Gene

Cytoplasm.

Gene Ontology (GO) - Cellular Components for NBPF5P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with NBPF5P: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for NBPF5P Gene

Pathways & Interactions for NBPF5P Gene

PathCards logo

SuperPathways for NBPF5P Gene

No Data Available

Gene Ontology (GO) - Biological Process for NBPF5P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NBPF5P Gene

Drugs & Compounds for NBPF5P Gene

No Compound Related Data Available

Transcripts for NBPF5P Gene

mRNA/cDNA for NBPF5P Gene

2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NBPF5P Gene

No ASD Table

Relevant External Links for NBPF5P Gene

GeneLoc Exon Structure for
NBPF5P

Expression for NBPF5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NBPF5P Gene

mRNA differential expression in normal tissues according to GTEx for NBPF5P Gene

This gene is overexpressed in Testis (x39.2) and Brain - Putamen (basal ganglia) (x4.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NBPF5P

mRNA Expression by UniProt/SwissProt for NBPF5P Gene:

Q86XG9-NBPF5_HUMAN
Tissue specificity: Expressed in brain and medulla.
genes like me logo Genes that share expression patterns with NBPF5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NBPF5P Gene

Orthologs for NBPF5P Gene

Evolution for NBPF5P Gene

ENSEMBL:
Gene Tree for NBPF5P (if available)
TreeFam:
Gene Tree for NBPF5P (if available)

No data available for Orthologs for NBPF5P Gene

Paralogs for NBPF5P Gene

(17) SIMAP similar genes for NBPF5P Gene using alignment to 1 proteins:

  • NBPF5_HUMAN
genes like me logo Genes that share paralogs with NBPF5P: view

No data available for Paralogs for NBPF5P Gene

Variants for NBPF5P Gene

Additional Variant Information for NBPF5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NBPF5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NBPF5P Gene

Disorders for NBPF5P Gene

MalaCards: The human disease database

(1) MalaCards diseases for NBPF5P Gene - From: GeneCards

Disorder Aliases PubMed IDs
neuroblastoma
  • nb
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for NBPF5P

genes like me logo Genes that share disorders with NBPF5P: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NBPF5P Gene

Publications for NBPF5P Gene

  1. A novel gene family NBPF: intricate structure generated by gene duplications during primate evolution. (PMID: 16079250) Vandepoele K … van Roy F (Molecular biology and evolution 2005) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for NBPF5P Gene

Sources for NBPF5P Gene