Aliases for NBAT1 Gene

Subcategory (RNA class) for NBAT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for NBAT1 Gene

  • Neuroblastoma Associated Transcript 1 2 3 5
  • Cancer Susceptibility Candidate 14 (Non-Protein Coding) 2 3
  • NBAT1 2 168
  • Neuroblastoma Associated Transcript-1 2
  • NONHSAG043158 92
  • HSALNG0048542 167
  • NBAT-1 3
  • CASC14 3

External Ids for NBAT1 Gene

Previous HGNC Symbols for NBAT1 Gene

  • CASC14

Summaries for NBAT1 Gene

GeneCards Summary for NBAT1 Gene

NBAT1 (Neuroblastoma Associated Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with NBAT1 include Neuroblastoma and Clear Cell Renal Cell Carcinoma.

Additional gene information for NBAT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NBAT1 Gene

Genomics for NBAT1 Gene

GeneHancer (GH) Regulatory Elements for NBAT1 Gene

Promoters and enhancers for NBAT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J022222 Enhancer 0.9 FANTOM5 ENCODE CraniofacialAtlas 500.7 -0.2 -210 0.9 HNRNPK POLR2A HDAC2 TCF12 TAF1 EP300 TBP SP1 NBAT1 lnc-PRL-16 PRL CASC15
GH06J022221 Enhancer 0.7 ENCODE CraniofacialAtlas 500.7 +1.0 999 1.3 TEAD4 NR3C1 TCF12 ESR1 JUND CHD7 EP300 SP1 NBAT1 lnc-PRL-16 ENSG00000219404 CASC15
GH06J022145 Promoter/Enhancer 1.8 VISTA Ensembl ENCODE CraniofacialAtlas dbSUPER 6.4 +74.4 74424 6.3 EP300 TCF12 USF1 TEAD4 FOS CTCF ZIC2 REST TCF7 RFX1 NBAT1 piR-31534-583 piR-59769-504 CASC15
GH06J022140 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.3 +80.6 80583 4.1 ZNF217 TCF12 REST TCF7 SKI TEAD1 NR2F2 FOXA2 ZNF316 POLR2A NBAT1 piR-31534-583 piR-59769-504 CASC15
GH06J022062 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 5.6 +159.2 159236 2.8 SIN3A EP300 RELA RCOR1 BCL11A TCF12 CBFB POLR2A ARNT MEF2B NBAT1 piR-43105-568 RF00100-126 lnc-HDGFL1-7 RN7SKP240 CASC15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NBAT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NBAT1 Gene

Genomic Locations for NBAT1 Gene
chr6:22,124,465-22,222,644
(GRCh38/hg38)
Size:
98,180 bases
Orientation:
Minus strand
chr6:22,134,831-22,147,422
(GRCh37/hg19)
Size:
12,592 bases
Orientation:
Minus strand

Genomic View for NBAT1 Gene

Genes around NBAT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NBAT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NBAT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NBAT1 Gene

Proteins for NBAT1 Gene

Post-translational modifications for NBAT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NBAT1 Gene

Domains & Families for NBAT1 Gene

Gene Families for NBAT1 Gene

genes like me logo Genes that share domains with NBAT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NBAT1 Gene

Function for NBAT1 Gene

Phenotypes From GWAS Catalog for NBAT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NBAT1 Gene

Localization for NBAT1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NBAT1 gene
Compartment Confidence
plasma membrane 1
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NBAT1 Gene

Pathways & Interactions for NBAT1 Gene

PathCards logo

SuperPathways for NBAT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for NBAT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NBAT1 Gene

Drugs & Compounds for NBAT1 Gene

No Compound Related Data Available

Transcripts for NBAT1 Gene

mRNA/cDNA for NBAT1 Gene

13 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
4 LncBook transcripts :
9 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for NBAT1 Gene

No ASD Table

Relevant External Links for NBAT1 Gene

GeneLoc Exon Structure for
NBAT1

Expression for NBAT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NBAT1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NBAT1

genes like me logo Genes that share expression patterns with NBAT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NBAT1 Gene

Orthologs for NBAT1 Gene

Evolution for NBAT1 Gene

ENSEMBL:
Gene Tree for NBAT1 (if available)
TreeFam:
Gene Tree for NBAT1 (if available)

No data available for Orthologs for NBAT1 Gene

Paralogs for NBAT1 Gene

No data available for Paralogs for NBAT1 Gene

Variants for NBAT1 Gene

Additional dbSNP identifiers (rs#s) for NBAT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for NBAT1 Gene

Variant ID Type Subtype PubMed ID
nsv830602 CNV gain 17160897

Additional Variant Information for NBAT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NBAT1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NBAT1 Gene

Disorders for NBAT1 Gene

MalaCards: The human disease database

(6) MalaCards diseases for NBAT1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
neuroblastoma
  • nb
clear cell renal cell carcinoma
  • clear cell carcinoma of kidney
ovarian cancer
  • ovarian cancer, somatic
breast cancer
  • breast cancer, familial
autonomic nervous system neoplasm
  • tumor of autonomic nervous system
- elite association - COSMIC cancer census association via MalaCards
Search NBAT1 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for NBAT1

genes like me logo Genes that share disorders with NBAT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NBAT1 Gene

Publications for NBAT1 Gene

  1. Effect of downregulated lncRNA NBAT1 on the biological behavior of glioblastoma cells. (PMID: 29771423) Liu J … Zhang Y (European review for medical and pharmacological sciences 2018) 2 3 54
  2. NBAT1 suppresses breast cancer metastasis by regulating DKK1 via PRC2. (PMID: 26378045) Hu P … Su S (Oncotarget 2015) 2 3 54
  3. Fighting Neuroblastomas with NBAT1. (PMID: 25859549) Pandey GK … Kanduri C (Oncoscience 2015) 2 3 54
  4. The risk-associated long noncoding RNA NBAT-1 controls neuroblastoma progression by regulating cell proliferation and neuronal differentiation. (PMID: 25517750) Pandey GK … Kanduri C (Cancer cell 2014) 2 3 54
  5. Long noncoding RNA neuroblastoma-associated transcript 1 gene inhibits malignant cellular phenotypes of bladder cancer through miR-21/SOCS6 axis. (PMID: 30310053) Liu Z … Zhang H (Cell death & disease 2018) 3 54

Products for NBAT1 Gene

Sources for NBAT1 Gene