Aliases for NBAT1 Gene

Data sources for NBAT1 Gene:

RNA type for NBAT1 Gene

lncRNA

Aliases for NBAT1 Gene

External Ids for NBAT1 Gene

Previous HGNC Symbols for NBAT1 Gene

  • CASC14

Summaries for NBAT1 Gene

GeneCards Summary for NBAT1 Gene

NBAT1 (Neuroblastoma Associated Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with NBAT1 include Neuroblastoma and Clear Cell Renal Cell Carcinoma.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NBAT1 Gene

Genomics for NBAT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NBAT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J022145 Promoter/Enhancer 2.1 VISTA EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 256.4 +74.4 74424 6.3 ZIC2 REST CTCF FOXA2 RXRA SMAD4 TEAD3 RAD21 FOXP1 BHLHE40 NBAT1 CASC15 HSALNG0048533-001 piR-31534-583 PRL SOX4
GH06J022222 Enhancer 0.7 FANTOM5 ENCODE CraniofacialAtlas 250.7 -0.2 -210 0.9 POLR2A TAF1 SP1 NBAT1 lnc-PRL-16 HSALNG0048546 PRL SOX4 CASC15
GH06J022221 Enhancer 0.5 ENCODE CraniofacialAtlas 250.7 +1.0 999 1.3 SP1 EP300 NBAT1 lnc-PRL-16 ENSG00000219404 PRL SOX4 CASC15
GH06J022140 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.3 +80.6 80583 4.1 HOMEZ ZNF217 FOXA2 SMAD4 SAP130 ETV4 RARA ZNF316 TEAD3 THRB NBAT1 piR-31534-583 HSALNG0048533-001 PRL CASC15 SOX4
GH06J022062 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 5.6 +159.2 159236 2.8 BCLAF1 POLR2A BCL11A SIN3A EBF1 CBFB MAX BHLHE40 BATF ZNF24 NBAT1 piR-43105-568 lnc-HDGFL1-7 PRL CASC15 SOX4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NBAT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NBAT1 Gene

Latest Assembly
chr6:22,124,464-22,222,644
(GRCh38/hg38)
Size:
98,181 bases
Orientation:
Minus strand

Previous Assembly
chr6:22,134,831-22,147,422
(GRCh37/hg19 by Entrez Gene)
Size:
12,592 bases
Orientation:
Minus strand

chr6:22,135,186-22,147,422
(GRCh37/hg19 by Ensembl)
Size:
12,237 bases
Orientation:
Minus strand

Genomic View for NBAT1 Gene

Genes around NBAT1 on UCSC Golden Path with GeneCards custom track
NBAT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NBAT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NBAT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NBAT1 Gene

Proteins for NBAT1 Gene

Post-translational modifications for NBAT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NBAT1 Gene

Domains & Families for NBAT1 Gene

Gene Families for NBAT1 Gene

genes like me logo Genes that share domains with NBAT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NBAT1 Gene

Function for NBAT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NBAT1 Gene

Localization for NBAT1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NBAT1 gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NBAT1 Gene

Pathways & Interactions for NBAT1 Gene

PathCards logo

SuperPathways for NBAT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NBAT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NBAT1 Gene

Drugs & Compounds for NBAT1 Gene

No Compound Related Data Available

Transcripts for NBAT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NBAT1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF609C_9606 lncRNA 3692 1

Ensembl: ENST00000566912 (view in UCSC) ,

URS0000759BF6_9606 lncRNA 2295 1

RefSeq: NR_034143,

URS00008BBB0F_9606 lncRNA 1243 3

LncBook: HSALNT0102462,

LNCipedia: NBAT1:1,

NONCODE: NONHSAT108063.2,

URS0000D5B009_9606 lncRNA 6158 2

LncBook: HSALNT0102457,

LNCipedia: NBAT1:8,

URS00009C00C6_9606 lncRNA 411 2

LncBook: HSALNT0102458,

NONCODE: NONHSAT208867.1,

NBAT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NBAT1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NBAT1 Gene

No ASD Table

Relevant External Links for NBAT1 Gene

GeneLoc Exon Structure for
NBAT1

Expression for NBAT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NBAT1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NBAT1

genes like me logo Genes that share expression patterns with NBAT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NBAT1 Gene

Orthologs for NBAT1 Gene

Evolution for NBAT1 Gene

ENSEMBL:
Gene Tree for NBAT1 (if available)
TreeFam:
Gene Tree for NBAT1 (if available)
Alliance of Genome Resources:
Additional Orthologs for NBAT1

No data available for Orthologs for NBAT1 Gene

Paralogs for NBAT1 Gene

No data available for Paralogs for NBAT1 Gene

Variants for NBAT1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for NBAT1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for NBAT1 Gene

Variant ID Type Subtype PubMed ID
nsv830602 CNV gain 17160897

Additional Variant Information for NBAT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NBAT1
Leiden Open Variation Database (LOVD)
NBAT1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NBAT1 Gene

Disorders for NBAT1 Gene

MalaCards: The human disease database

(6) MalaCards diseases for NBAT1 Gene - From: LNC, COP, and GCD

Disorder Aliases PubMed IDs
neuroblastoma
  • nb
clear cell renal cell carcinoma
  • clear cell carcinoma of kidney
ovarian cancer
  • ovarian cancer, somatic
breast cancer
  • breast cancer, familial
autonomic nervous system neoplasm
  • tumor of autonomic nervous system
- elite association - COSMIC cancer census association via MalaCards
Search NBAT1 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for NBAT1

genes like me logo Genes that share disorders with NBAT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NBAT1 Gene

Publications for NBAT1 Gene

  1. NBAT1 suppresses breast cancer metastasis by regulating DKK1 via PRC2. (PMID: 26378045) Hu P … Su S (Oncotarget 2015) 2 3 72
  2. The risk-associated long noncoding RNA NBAT-1 controls neuroblastoma progression by regulating cell proliferation and neuronal differentiation. (PMID: 25517750) Pandey GK … Kanduri C (Cancer cell 2014) 2 3 72
  3. Effect of downregulated lncRNA NBAT1 on the biological behavior of glioblastoma cells. (PMID: 29771423) Liu J … Zhang Y (European review for medical and pharmacological sciences 2018) 2 3
  4. Fighting Neuroblastomas with NBAT1. (PMID: 25859549) Pandey GK … Kanduri C (Oncoscience 2015) 2 3
  5. Expression of long noncoding RNA NBAT1 is associated with the outcome of patients with non-small cell lung cancer. (PMID: 32844929) Wang DL … Tian JY (Revista da Associacao Medica Brasileira (1992) 2020) 3

Products for NBAT1 Gene

Sources for NBAT1 Gene