Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NBAT1 Gene

Subcategory (RNA class) for NBAT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NBAT1 Gene

  • Neuroblastoma Associated Transcript 1 2 3 5
  • Cancer Susceptibility Candidate 14 (Non-Protein Coding) 2 3
  • Neuroblastoma Associated Transcript-1 2
  • NBAT-1 3
  • CASC14 3

External Ids for NBAT1 Gene

Previous HGNC Symbols for NBAT1 Gene

  • CASC14

Summaries for NBAT1 Gene

GeneCards Summary for NBAT1 Gene

NBAT1 (Neuroblastoma Associated Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with NBAT1 include Neuroblastoma.

Additional gene information for NBAT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NBAT1 Gene

Genomics for NBAT1 Gene

GeneHancer (GH) Regulatory Elements for NBAT1 Gene

Promoters and enhancers for NBAT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I022145 Enhancer 1.6 VISTA Ensembl ENCODE dbSUPER 557 -1.0 -1027 6.3 PKNOX1 FOXA2 ARID4B RAD21 RFX5 ZNF335 SCRT2 RCOR1 FOS RUNX3 NBAT1 ENSG00000219404 CASC15
GH06I022140 Enhancer 1.2 Ensembl ENCODE dbSUPER 6.6 +5.0 5005 3.9 ELF3 CLOCK FOXA2 ARID4B THRB RARA MIXL1 MXD4 MIER2 REST NBAT1 PIR35992 CASC15
GH06I022070 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 5.6 +75.1 75117 4.1 USF1 CEBPB CEBPG ZNF398 MNT ZEB2 RAD21 ATF2 ZNF518A ATF4 RN7SKP240 NBAT1 GC06P021990 CASC15
GH06I022062 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.7 +83.8 83785 2.8 PKNOX1 BACH1 EBF1 BATF RELA NFATC1 ATF7 ETV6 BCLAF1 IKZF2 NBAT1 RN7SKP240 GC06P021990 CASC15
GH06I022112 Enhancer 0.8 Ensembl ENCODE 6.5 +34.0 33969 2.2 JUN HLF CEBPB REST EP300 SP1 JUND ATF3 STAT3 ZBTB33 NBAT1 PIR35992 GC06P022087 CASC15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NBAT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NBAT1 Gene

Genomic Locations for NBAT1 Gene
chr6:22,134,602-22,147,193
(GRCh38/hg38)
Size:
12,592 bases
Orientation:
Minus strand
chr6:22,134,831-22,147,422
(GRCh37/hg19)

Genomic View for NBAT1 Gene

Genes around NBAT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NBAT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NBAT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NBAT1 Gene

Proteins for NBAT1 Gene

Post-translational modifications for NBAT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NBAT1 Gene

Domains & Families for NBAT1 Gene

Gene Families for NBAT1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NBAT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NBAT1 Gene

Function for NBAT1 Gene

Phenotypes From GWAS Catalog for NBAT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NBAT1 Gene

Localization for NBAT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NBAT1 Gene

Pathways & Interactions for NBAT1 Gene

SuperPathways for NBAT1 Gene

No Data Available

Interacting Proteins for NBAT1 Gene

Gene Ontology (GO) - Biological Process for NBAT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NBAT1 Gene

Drugs & Compounds for NBAT1 Gene

No Compound Related Data Available

Transcripts for NBAT1 Gene

mRNA/cDNA for NBAT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NBAT1 Gene

No ASD Table

Relevant External Links for NBAT1 Gene

GeneLoc Exon Structure for
NBAT1
ECgene alternative splicing isoforms for
NBAT1

Expression for NBAT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NBAT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of NBAT1 Gene:

NBAT1
genes like me logo Genes that share expression patterns with NBAT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NBAT1 Gene

Orthologs for NBAT1 Gene

Evolution for NBAT1 Gene

ENSEMBL:
Gene Tree for NBAT1 (if available)
TreeFam:
Gene Tree for NBAT1 (if available)

No data available for Orthologs for NBAT1 Gene

Paralogs for NBAT1 Gene

No data available for Paralogs for NBAT1 Gene

Variants for NBAT1 Gene

Sequence variations from dbSNP and Humsavar for NBAT1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000150088 -- 22,142,382(-) T/A intron_variant
rs1000198385 -- 22,145,511(-) C/T intron_variant
rs1000517239 -- 22,146,342(-) C/T intron_variant
rs1000601921 -- 22,134,201(-) T/C downstream_transcript_variant
rs1000667932 -- 22,140,307(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NBAT1 Gene

Variant ID Type Subtype PubMed ID
nsv830602 CNV gain 17160897

Additional Variant Information for NBAT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NBAT1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NBAT1 Gene

Disorders for NBAT1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for NBAT1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
neuroblastoma
  • neuroblastoma, susceptibility to
- elite association - COSMIC cancer census association via MalaCards
Search NBAT1 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for NBAT1

genes like me logo Genes that share disorders with NBAT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NBAT1 Gene

Publications for NBAT1 Gene

  1. Fighting Neuroblastomas with NBAT1. (PMID: 25859549) Pandey GK … Kanduri C (Oncoscience 2015) 2 3 58
  2. NBAT1 suppresses breast cancer metastasis by regulating DKK1 via PRC2. (PMID: 26378045) Hu P … Su S (Oncotarget 2015) 2 3 58
  3. The risk-associated long noncoding RNA NBAT-1 controls neuroblastoma progression by regulating cell proliferation and neuronal differentiation. (PMID: 25517750) Pandey GK … Kanduri C (Cancer cell 2014) 3 58
  4. Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma. (PMID: 22941191) Diskin SJ … Maris JM (Nature genetics 2012) 3 58
  5. Integrative genomics identifies LMO1 as a neuroblastoma oncogene. (PMID: 21124317) Wang K … Maris JM (Nature 2011) 3 58

Products for NBAT1 Gene

Sources for NBAT1 Gene

Content
Loading form....