Aliases for NAV2-IT1 Gene

Data sources for NAV2-IT1 Gene:

RNA type for NAV2-IT1 Gene


Aliases for NAV2-IT1 Gene

External Ids for NAV2-IT1 Gene

Previous GeneCards Identifiers for NAV2-IT1 Gene

  • GC00U933937
  • GC11P019403

Summaries for NAV2-IT1 Gene

GeneCards Summary for NAV2-IT1 Gene

NAV2-IT1 (NAV2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NAV2-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NAV2-IT1 Gene

Genomics for NAV2-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NAV2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J019380 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 250.7 +0.9 918 2.8 ELF1 GABPA MAFK JUND NCOA3 CREB1 NFE2L2 FOS NAV2-IT1 NAV2 HSALNG0083051 DBX1
GH11J019389 Enhancer 0.8 Ensembl ENCODE 0.4 +9.6 9596 1.9 CEBPA ATF3 ZIC2 YY1 FOXA2 RXRA ZBTB33 SOX5 JUND HNF4A HSALNG0083051 NAV2-AS4 HTATIP2 NAV2-IT1 NAV2 DBX1
GH11J019363 Enhancer 0.8 Ensembl ENCODE 0.4 -12.6 -12582 8.6 YY1 CEBPB ZNF217 CTBP1 RXRA NR2F1 DPF2 SP1 HLF ZNF692 NAV2 NAV2-AS5 NAV2-IT1 NONHSAG007824.2 DBX1
GH11J019373 Enhancer 0.6 Ensembl ENCODE 0.4 -6.4 -6382 2.6 JUND CEBPB USF2 BHLHE40 EP300 FOS NAV2 NAV2-IT1 NONHSAG007824.2 DBX1
GH11J019359 Enhancer 0.6 Ensembl ENCODE 0.4 -20.8 -20782 0.6 ATF2 JUND JUN ATF3 CREB1 ATF7 NONHSAG007824.2 NAV2 NAV2-IT1 DBX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NAV2-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NAV2-IT1 Gene

Latest Assembly
4,533 bases
Plus strand

Previous Assembly
(GRCh37/hg19 by Ensembl)
4,531 bases
Plus strand

Genomic View for NAV2-IT1 Gene

Genes around NAV2-IT1 on UCSC Golden Path with GeneCards custom track
NAV2-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NAV2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAV2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for NAV2-IT1 Gene

Proteins for NAV2-IT1 Gene

Post-translational modifications for NAV2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAV2-IT1 Gene

Domains & Families for NAV2-IT1 Gene

Gene Families for NAV2-IT1 Gene

genes like me logo Genes that share domains with NAV2-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NAV2-IT1 Gene

Function for NAV2-IT1 Gene

Phenotypes From GWAS Catalog for NAV2-IT1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAV2-IT1 Gene

Localization for NAV2-IT1 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NAV2-IT1 gene
Compartment Confidence
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NAV2-IT1 Gene

Pathways & Interactions for NAV2-IT1 Gene

PathCards logo

SuperPathways for NAV2-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NAV2-IT1 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NAV2-IT1 Gene

Drugs & Compounds for NAV2-IT1 Gene

No Compound Related Data Available

Transcripts for NAV2-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NAV2-IT1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000012A8C0_9606 lncRNA 508 4

Ensembl: ENST00000528204 (view in UCSC) ,

LncBook: HSALNT0172818,

LNCipedia: NAV2-IT1:1,


URS00009B824A_9606 lncRNA 506 2

LncBook: HSALNT0172819,


URS0001BCFDE9_9606 lncRNA 506 1

LncBook: HSALNT0172818,

URS0001BD64F1_9606 lncRNA 506 1

LncBook: HSALNT0172819,

NAV2-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NAV2-IT1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NAV2-IT1 Gene

No ASD Table

Relevant External Links for NAV2-IT1 Gene

GeneLoc Exon Structure for

Expression for NAV2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NAV2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for NAV2-IT1 Gene

This gene is overexpressed in Thyroid (x5.6) and Adipose - Visceral (Omentum) (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NAV2-IT1

genes like me logo Genes that share expression patterns with NAV2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAV2-IT1 Gene

Orthologs for NAV2-IT1 Gene

Evolution for NAV2-IT1 Gene

Gene Tree for NAV2-IT1 (if available)
Gene Tree for NAV2-IT1 (if available)
Alliance of Genome Resources:
Additional Orthologs for NAV2-IT1

No data available for Orthologs for NAV2-IT1 Gene

Paralogs for NAV2-IT1 Gene

No data available for Paralogs for NAV2-IT1 Gene

Variants for NAV2-IT1 Gene

Additional Variant Information for NAV2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
Leiden Open Variation Database (LOVD)

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NAV2-IT1 Gene

Disorders for NAV2-IT1 Gene

Additional Disease Information for NAV2-IT1

No disorders were found for NAV2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAV2-IT1 Gene

Publications for NAV2-IT1 Gene

No publications were found for NAV2-IT1 Gene.

Products for NAV2-IT1 Gene

Sources for NAV2-IT1 Gene