Aliases for NAV2-AS5 Gene

Subcategory (RNA class) for NAV2-AS5 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for NAV2-AS5 Gene

  • NAV2 Antisense RNA 5 2 3 5
  • NAV2 Antisense RNA 5 (Non-Protein Coding) 2 3
  • NAV2-AS5 2 170
  • NONHSAG007826 94
  • HSALNG0083054 169

External Ids for NAV2-AS5 Gene

Previous GeneCards Identifiers for NAV2-AS5 Gene

  • GC00U933090
  • GC11M019525

Summaries for NAV2-AS5 Gene

GeneCards Summary for NAV2-AS5 Gene

NAV2-AS5 (NAV2 Antisense RNA 5) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NAV2-AS5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NAV2-AS5 Gene

Genomics for NAV2-AS5 Gene

GeneHancer (GH) Regulatory Elements for NAV2-AS5 Gene

Promoters and enhancers for NAV2-AS5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J019508 Enhancer 1 Ensembl ENCODE 750.6 -0.9 -871 2.2 FOXA1 SMARCE1 NR2F1 NR2F6 RAD21 ZBTB33 ELF3 SP1 CEBPG SMARCA4 NAV2-AS5 ENSG00000207407 NAV2-AS4 NAV2
GH11J019475 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 11.1 +31.8 31830 1.2 SP1 RAD21 MLLT1 CREM IKZF1 ZIC2 IKZF2 EZH2 DPF2 EED NAV2-AS5 NAV2-AS4 lnc-E2F8-3 RF00001-059 RNA5SP335 NAV2
GH11J019363 Enhancer 0.8 Ensembl ENCODE 10.2 +139.3 139329 8.6 HLF PRDM1 CTBP1 SP1 CEBPB POLR2A ZNF692 RUNX3 FOS YY1 NAV2 NAV2-AS5 NAV2-IT1 NONHSAG007824.2
GH11J019395 Enhancer 0.7 Ensembl ENCODE 11 +111.9 111929 1 ETV6 POU5F1 RELA IKZF1 IKZF2 EED RUNX3 NBN ATF2 REST NAV2-AS5 NAV2 NAV2-AS4 HTATIP2 RNA5SP335 RF00001-059 NAV2-IT1
GH11J019393 Enhancer 0.3 Ensembl 11 +113.3 113329 0.6 CEBPB NAV2-AS5 NAV2 NAV2-AS4 RNA5SP335 RF00001-059 NAV2-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NAV2-AS5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NAV2-AS5 Gene

Genomic Locations for NAV2-AS5 Gene
chr11:19,502,672-19,507,230
(GRCh38/hg38)
Size:
4,559 bases
Orientation:
Minus strand
chr11:19,524,219-19,528,776
(GRCh37/hg19)
Size:
4,558 bases
Orientation:
Minus strand

Genomic View for NAV2-AS5 Gene

Genes around NAV2-AS5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NAV2-AS5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAV2-AS5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAV2-AS5 Gene

Proteins for NAV2-AS5 Gene

Post-translational modifications for NAV2-AS5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAV2-AS5 Gene

Domains & Families for NAV2-AS5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NAV2-AS5 Gene

Function for NAV2-AS5 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAV2-AS5 Gene

Localization for NAV2-AS5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NAV2-AS5 Gene

Pathways & Interactions for NAV2-AS5 Gene

PathCards logo

SuperPathways for NAV2-AS5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NAV2-AS5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NAV2-AS5 Gene

Drugs & Compounds for NAV2-AS5 Gene

No Compound Related Data Available

Transcripts for NAV2-AS5 Gene

mRNA/cDNA for NAV2-AS5 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(3) NONCODE transcripts :
(1) LncBook transcripts :
(3) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NAV2-AS5 Gene

No ASD Table

Relevant External Links for NAV2-AS5 Gene

GeneLoc Exon Structure for
NAV2-AS5
ECgene alternative splicing isoforms for
NAV2-AS5

Expression for NAV2-AS5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NAV2-AS5 Gene

mRNA differential expression in normal tissues according to GTEx for NAV2-AS5 Gene

This gene is overexpressed in Testis (x28.0).

SOURCE GeneReport for Unigene cluster for NAV2-AS5 Gene:

Hs.434602
genes like me logo Genes that share expression patterns with NAV2-AS5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAV2-AS5 Gene

Orthologs for NAV2-AS5 Gene

Evolution for NAV2-AS5 Gene

ENSEMBL:
Gene Tree for NAV2-AS5 (if available)
TreeFam:
Gene Tree for NAV2-AS5 (if available)

No data available for Orthologs for NAV2-AS5 Gene

Paralogs for NAV2-AS5 Gene

No data available for Paralogs for NAV2-AS5 Gene

Variants for NAV2-AS5 Gene

Sequence variations from dbSNP and Humsavar for NAV2-AS5 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1001049141 -- 19,508,172(-) T/A upstream_transcript_variant
rs1001523970 -- 19,506,386(-) G/A non_coding_transcript_variant
rs1001592714 -- 19,503,465(-) G/A/T non_coding_transcript_variant
rs1001666427 -- 19,507,314(-) A/C upstream_transcript_variant
rs1002594170 -- 19,504,764(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NAV2-AS5 Gene

Variant ID Type Subtype PubMed ID
esv3891939 CNV gain 25118596

Additional Variant Information for NAV2-AS5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAV2-AS5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NAV2-AS5 Gene

Disorders for NAV2-AS5 Gene

Additional Disease Information for NAV2-AS5

No disorders were found for NAV2-AS5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAV2-AS5 Gene

Publications for NAV2-AS5 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for NAV2-AS5 Gene

Sources for NAV2-AS5 Gene