Aliases for NAV2-AS5 Gene

Data sources for NAV2-AS5 Gene:

RNA type for NAV2-AS5 Gene

lncRNA

Aliases for NAV2-AS5 Gene

External Ids for NAV2-AS5 Gene

Previous GeneCards Identifiers for NAV2-AS5 Gene

  • GC00U933090
  • GC11M019525

Summaries for NAV2-AS5 Gene

GeneCards Summary for NAV2-AS5 Gene

NAV2-AS5 (NAV2 Antisense RNA 5) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NAV2-AS5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NAV2-AS5 Gene

Genomics for NAV2-AS5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NAV2-AS5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J019508 Enhancer 1 Ensembl ENCODE 250.7 -1.2 -1171 1.6 CEBPA ATF3 YY1 CEBPB HOMEZ EP300 FOXA2 SMAD4 RXRA RAD21 NAV2-AS5 ENSG00000207407 HSALNG0083055 L13714-052 NAV2 DBX1
GH11J019475 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 11.1 +31.8 31829 1.2 SP1 ZIC2 RXRA EBF1 BATF IKZF1 RAD21 MTA3 ATF2 JUNB NAV2-AS5 NAV2-AS4 lnc-E2F8-3 HSALNG0083052 NAV2 DBX1
GH11J019363 Enhancer 0.8 Ensembl ENCODE 10.2 +139.3 139329 8.6 YY1 CEBPB ZNF217 CTBP1 RXRA NR2F1 DPF2 SP1 HLF ZNF692 NAV2 NAV2-AS5 NAV2-IT1 NONHSAG007824.2 DBX1
GH11J019395 Enhancer 0.7 Ensembl ENCODE 11 +111.9 111929 1 REST IKZF1 ATF2 POU5F1 EED IKZF2 NBN RUNX3 ETV6 RELB NAV2-AS5 NAV2 NAV2-AS4 HTATIP2 HSALNG0083051 RF00001-054 RNA5SP335 DBX1
GH11J019455 Enhancer 0.3 Ensembl 10.8 +50.5 50529 3 BACH1 NAV2-AS5 lnc-E2F8-3 HSALNG0083052 NAV2 DBX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NAV2-AS5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NAV2-AS5 Gene

Latest Assembly
chr11:19,502,671-19,507,230
(GRCh38/hg38)
Size:
4,560 bases
Orientation:
Minus strand

Previous Assembly
chr11:19,524,219-19,528,776
(GRCh37/hg19 by Entrez Gene)
Size:
4,558 bases
Orientation:
Minus strand

chr11:19,524,219-19,528,776
(GRCh37/hg19 by Ensembl)
Size:
4,558 bases
Orientation:
Minus strand

Genomic View for NAV2-AS5 Gene

Genes around NAV2-AS5 on UCSC Golden Path with GeneCards custom track
NAV2-AS5 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NAV2-AS5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAV2-AS5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAV2-AS5 Gene

Proteins for NAV2-AS5 Gene

Post-translational modifications for NAV2-AS5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAV2-AS5 Gene

Domains & Families for NAV2-AS5 Gene

Gene Families for NAV2-AS5 Gene

genes like me logo Genes that share domains with NAV2-AS5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NAV2-AS5 Gene

Function for NAV2-AS5 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAV2-AS5 Gene

Localization for NAV2-AS5 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NAV2-AS5 gene
Compartment Confidence
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NAV2-AS5 Gene

Pathways & Interactions for NAV2-AS5 Gene

PathCards logo

SuperPathways for NAV2-AS5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NAV2-AS5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NAV2-AS5 Gene

Drugs & Compounds for NAV2-AS5 Gene

No Compound Related Data Available

Transcripts for NAV2-AS5 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NAV2-AS5 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002C070C_9606 lncRNA 569 4

Ensembl: ENST00000530652 (view in UCSC) ,

LncBook: HSALNT0172825,

LNCipedia: NAV2-AS5:3,

NONCODE: NONHSAT018340.2,

URS00003AA26A_9606 lncRNA 3310 3

Ensembl: ENST00000528726 (view in UCSC) ,

LNCipedia: NAV2-AS5:1,

NONCODE: NONHSAT018339.2,

URS000075AF97_9606 lncRNA 3306 1

RefSeq: NR_049725,

URS00009B79A4_9606 lncRNA 3510 1

NONCODE: NONHSAT160141.1,

URS00008BC13A_9606 lncRNA 3309 1

LNCipedia: NAV2-AS5:2,

NAV2-AS5 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NAV2-AS5 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NAV2-AS5 Gene

No ASD Table

Relevant External Links for NAV2-AS5 Gene

GeneLoc Exon Structure for
NAV2-AS5

Expression for NAV2-AS5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NAV2-AS5 Gene

mRNA differential expression in normal tissues according to GTEx for NAV2-AS5 Gene

This gene is overexpressed in Testis (x28.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NAV2-AS5

SOURCE GeneReport for Unigene cluster for NAV2-AS5 Gene:

Hs.434602
genes like me logo Genes that share expression patterns with NAV2-AS5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAV2-AS5 Gene

Orthologs for NAV2-AS5 Gene

Evolution for NAV2-AS5 Gene

ENSEMBL:
Gene Tree for NAV2-AS5 (if available)
TreeFam:
Gene Tree for NAV2-AS5 (if available)
Alliance of Genome Resources:
Additional Orthologs for NAV2-AS5

No data available for Orthologs for NAV2-AS5 Gene

Paralogs for NAV2-AS5 Gene

No data available for Paralogs for NAV2-AS5 Gene

Variants for NAV2-AS5 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for NAV2-AS5 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for NAV2-AS5 Gene

Variant ID Type Subtype PubMed ID
esv3891939 CNV gain 25118596

Additional Variant Information for NAV2-AS5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAV2-AS5
Leiden Open Variation Database (LOVD)
NAV2-AS5

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NAV2-AS5 Gene

Disorders for NAV2-AS5 Gene

Additional Disease Information for NAV2-AS5

No disorders were found for NAV2-AS5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAV2-AS5 Gene

Publications for NAV2-AS5 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for NAV2-AS5 Gene

Sources for NAV2-AS5 Gene