Aliases for NAV2-AS4 Gene

Subcategory (RNA class) for NAV2-AS4 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for NAV2-AS4 Gene

  • NAV2 Antisense RNA 4 2 3 5
  • NAV2 Antisense RNA 4 (Non-Protein Coding) 2 3
  • NAV2-AS4 2 170
  • HSALNG0083056 169
  • NONHSAG007827 94
  • HCG1991294 3

External Ids for NAV2-AS4 Gene

Previous GeneCards Identifiers for NAV2-AS4 Gene

  • GC11M019533

Summaries for NAV2-AS4 Gene

GeneCards Summary for NAV2-AS4 Gene

NAV2-AS4 (NAV2 Antisense RNA 4) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NAV2-AS4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NAV2-AS4 Gene

Genomics for NAV2-AS4 Gene

GeneHancer (GH) Regulatory Elements for NAV2-AS4 Gene

Promoters and enhancers for NAV2-AS4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J019524 Enhancer 0.8 Ensembl ENCODE 750.6 -1.5 -1493 2.9 HLF RAD21 SP1 RXRA ZNF629 CEBPB MNT ZBTB20 JUND RUNX3 NAV2-AS4 L13714-052 NAV2
GH11J019432 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 9.9 +91.8 91766 3.8 SP1 CREM IKZF1 IKZF2 ZNF143 ZNF692 CBFB ZSCAN29 ZNF512B ZBTB20 ENSG00000254966 NAV2-AS4 NAV2 RNA5SP335 RF00001-059 lnc-E2F8-3
GH11J019475 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 10.6 +48.7 48678 1.2 SP1 RAD21 MLLT1 CREM IKZF1 ZIC2 IKZF2 EZH2 DPF2 EED NAV2-AS5 NAV2-AS4 lnc-E2F8-3 RF00001-059 RNA5SP335 NAV2
GH11J019563 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 10 -40.3 -40297 1.4 CTCF CC2D1A RAD21 ARID2 REST TRIM22 PATZ1 MAZ DEK SMC3 ENSG00000207407 NAV2-AS4 MIR4486 L13714-052 NAV2
GH11J019389 Enhancer 0.8 Ensembl ENCODE 10.4 +134.0 133999 1.9 FOXA1 RAD21 SP1 NCOA3 TFE3 PKNOX1 ZIC2 CEBPA RXRA FOXA2 NAV2-AS4 HTATIP2 NAV2-IT1 RNA5SP335 RF00001-059 NAV2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NAV2-AS4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NAV2-AS4 Gene

Genomic Locations for NAV2-AS4 Gene
chr11:19,510,890-19,524,078
(GRCh38/hg38)
Size:
13,189 bases
Orientation:
Minus strand
chr11:19,532,437-19,545,625
(GRCh37/hg19)
Size:
13,189 bases
Orientation:
Minus strand

Genomic View for NAV2-AS4 Gene

Genes around NAV2-AS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NAV2-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAV2-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAV2-AS4 Gene

Proteins for NAV2-AS4 Gene

Post-translational modifications for NAV2-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAV2-AS4 Gene

Domains & Families for NAV2-AS4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NAV2-AS4 Gene

Function for NAV2-AS4 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAV2-AS4 Gene

Localization for NAV2-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NAV2-AS4 Gene

Pathways & Interactions for NAV2-AS4 Gene

PathCards logo

SuperPathways for NAV2-AS4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NAV2-AS4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NAV2-AS4 Gene

Drugs & Compounds for NAV2-AS4 Gene

No Compound Related Data Available

Transcripts for NAV2-AS4 Gene

mRNA/cDNA for NAV2-AS4 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) LNCipedia transcripts :
(1) LncBook transcripts :
(3) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NAV2-AS4 Gene

No ASD Table

Relevant External Links for NAV2-AS4 Gene

GeneLoc Exon Structure for
NAV2-AS4
ECgene alternative splicing isoforms for
NAV2-AS4

Expression for NAV2-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NAV2-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for NAV2-AS4 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x4.5), Testis (x4.1), and Liver (x4.0).

SOURCE GeneReport for Unigene cluster for NAV2-AS4 Gene:

Hs.132600
genes like me logo Genes that share expression patterns with NAV2-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAV2-AS4 Gene

Orthologs for NAV2-AS4 Gene

Evolution for NAV2-AS4 Gene

ENSEMBL:
Gene Tree for NAV2-AS4 (if available)
TreeFam:
Gene Tree for NAV2-AS4 (if available)

No data available for Orthologs for NAV2-AS4 Gene

Paralogs for NAV2-AS4 Gene

No data available for Paralogs for NAV2-AS4 Gene

Variants for NAV2-AS4 Gene

Sequence variations from dbSNP and Humsavar for NAV2-AS4 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000272624 -- 19,524,535(-) T/G upstream_transcript_variant
rs1000365651 -- 19,513,459(-) G/A intron_variant
rs1000425419 -- 19,519,518(-) C/T intron_variant
rs1000798854 -- 19,513,278(-) G/A intron_variant
rs1000888902 -- 19,519,771(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NAV2-AS4 Gene

Variant ID Type Subtype PubMed ID
esv2676711 CNV deletion 23128226
esv3625537 CNV loss 21293372
esv3891939 CNV gain 25118596

Additional Variant Information for NAV2-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAV2-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NAV2-AS4 Gene

Disorders for NAV2-AS4 Gene

Additional Disease Information for NAV2-AS4

No disorders were found for NAV2-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAV2-AS4 Gene

Publications for NAV2-AS4 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for NAV2-AS4 Gene

Sources for NAV2-AS4 Gene