Aliases for NAV2-AS4 Gene

Data sources for NAV2-AS4 Gene:

RNA type for NAV2-AS4 Gene

lncRNA

Aliases for NAV2-AS4 Gene

External Ids for NAV2-AS4 Gene

Previous GeneCards Identifiers for NAV2-AS4 Gene

  • GC11M019533

Summaries for NAV2-AS4 Gene

GeneCards Summary for NAV2-AS4 Gene

NAV2-AS4 (NAV2 Antisense RNA 4) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NAV2-AS4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NAV2-AS4 Gene

Genomics for NAV2-AS4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NAV2-AS4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J019547 Enhancer 0.2 Ensembl 250.7 +0.6 595 0.2 NAV2-AS4 L13714-052 NAV2 DBX1
GH11J019549 Enhancer 0.2 Ensembl 250.7 +1.1 1095 0.4 NAV2-AS4 L13714-052 NAV2 DBX1
GH11J019548 Enhancer 0.2 Ensembl 250.7 +1.6 1595 0.2 NAV2-AS4 L13714-052 NAV2 DBX1
GH11J019428 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 9.9 +117.5 117466 6 BCLAF1 SP1 ATF3 YY1 BCL11A FEZF1 ZNF217 FOXA2 RXRA IRF4 NAV2-AS4 NAV2 HSALNG0083052 lnc-E2F8-3 DBX1
GH11J019475 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 10.5 +73.3 73295 1.2 SP1 ZIC2 RXRA EBF1 BATF IKZF1 RAD21 MTA3 ATF2 JUNB NAV2-AS5 NAV2-AS4 lnc-E2F8-3 HSALNG0083052 NAV2 DBX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NAV2-AS4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NAV2-AS4 Gene

Latest Assembly
chr11:19,510,393-19,548,696
(GRCh38/hg38)
Size:
38,304 bases
Orientation:
Minus strand

Previous Assembly
chr11:19,532,440-19,545,625
(GRCh37/hg19 by Entrez Gene)
Size:
13,186 bases
Orientation:
Minus strand

chr11:19,532,437-19,541,443
(GRCh37/hg19 by Ensembl)
Size:
9,007 bases
Orientation:
Minus strand

Genomic View for NAV2-AS4 Gene

Genes around NAV2-AS4 on UCSC Golden Path with GeneCards custom track
NAV2-AS4 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NAV2-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAV2-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAV2-AS4 Gene

Proteins for NAV2-AS4 Gene

Post-translational modifications for NAV2-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAV2-AS4 Gene

Domains & Families for NAV2-AS4 Gene

Gene Families for NAV2-AS4 Gene

genes like me logo Genes that share domains with NAV2-AS4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NAV2-AS4 Gene

Function for NAV2-AS4 Gene

Phenotypes From GWAS Catalog for NAV2-AS4 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAV2-AS4 Gene

Localization for NAV2-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NAV2-AS4 Gene

Pathways & Interactions for NAV2-AS4 Gene

PathCards logo

SuperPathways for NAV2-AS4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NAV2-AS4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NAV2-AS4 Gene

Drugs & Compounds for NAV2-AS4 Gene

No Compound Related Data Available

Transcripts for NAV2-AS4 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NAV2-AS4 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075BDC1_9606 lncRNA 1369 3

RefSeq: NR_033989,

LNCipedia: NAV2-AS4:1,

NONCODE: NONHSAT018342.2,

URS00003E1340_9606 lncRNA 1181 3

Ensembl: ENST00000532874 (view in UCSC) ,

LNCipedia: NAV2-AS4:2,

NONCODE: NONHSAT018341.2,

URS00009AD0A9_9606 lncRNA 1181 2

LncBook: HSALNT0172832,

NONCODE: NONHSAT160142.1,

URS0001BF3A57_9606 lncRNA 1993 1

LncBook: HSALNT0172829,

URS0001BF41DE_9606 lncRNA 1967 1

LncBook: HSALNT0172830,

NAV2-AS4 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NAV2-AS4 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NAV2-AS4 Gene

No ASD Table

Relevant External Links for NAV2-AS4 Gene

GeneLoc Exon Structure for
NAV2-AS4

Expression for NAV2-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NAV2-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for NAV2-AS4 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x4.5), Testis (x4.1), and Liver (x4.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NAV2-AS4

SOURCE GeneReport for Unigene cluster for NAV2-AS4 Gene:

Hs.132600
genes like me logo Genes that share expression patterns with NAV2-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAV2-AS4 Gene

Orthologs for NAV2-AS4 Gene

Evolution for NAV2-AS4 Gene

ENSEMBL:
Gene Tree for NAV2-AS4 (if available)
TreeFam:
Gene Tree for NAV2-AS4 (if available)
Alliance of Genome Resources:
Additional Orthologs for NAV2-AS4

No data available for Orthologs for NAV2-AS4 Gene

Paralogs for NAV2-AS4 Gene

No data available for Paralogs for NAV2-AS4 Gene

Variants for NAV2-AS4 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for NAV2-AS4 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for NAV2-AS4 Gene

Variant ID Type Subtype PubMed ID
esv2676711 CNV deletion 23128226
esv3625537 CNV loss 21293372
esv3891939 CNV gain 25118596

Additional Variant Information for NAV2-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAV2-AS4
Leiden Open Variation Database (LOVD)
NAV2-AS4

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NAV2-AS4 Gene

Disorders for NAV2-AS4 Gene

Additional Disease Information for NAV2-AS4

No disorders were found for NAV2-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAV2-AS4 Gene

Publications for NAV2-AS4 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for NAV2-AS4 Gene

Sources for NAV2-AS4 Gene