Aliases for NAPA-AS1 Gene

Subcategory (RNA class) for NAPA-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for NAPA-AS1 Gene

  • NAPA Antisense RNA 1 2 3 5
  • NAPA Antisense RNA 1 (Non-Protein Coding) 2 3
  • HSALNG0126777 169
  • NONHSAG026122 94
  • Lnc-DHX34-4 170
  • NAPA-AS1 2

External Ids for NAPA-AS1 Gene

Previous GeneCards Identifiers for NAPA-AS1 Gene

  • GC19P047989

Summaries for NAPA-AS1 Gene

GeneCards Summary for NAPA-AS1 Gene

NAPA-AS1 (NAPA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with NAPA-AS1 include Mental Retardation, Autosomal Recessive 41.

Additional gene information for NAPA-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NAPA-AS1 Gene

Genomics for NAPA-AS1 Gene

GeneHancer (GH) Regulatory Elements for NAPA-AS1 Gene

Promoters and enhancers for NAPA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J047483 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.3 277 2.7 ZNF785 SIN3A SP1 ZBTB40 CTCF SIX5 RBPJ POLR2A USF2 ATF1 KPTN NAPA-AS1 lnc-KPTN-1 ZC3H4 NOP53-AS1 BICRA PRKD2 GRWD1 KDELR1 SLC1A5
GH19J047261 Enhancer 0.3 dbSUPER 10 -223.0 -223023 0.4 ATM RF00017-3030 CCDC9 ENSG00000268810 NAPA-AS1 piR-53036 lnc-C5AR1-3
GH19J047496 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +13.3 13323 2 SMARCE1 DACH1 TEAD4 ZFX CBFA2T2 SMARCA4 TRIM24 GMEB1 DPF2 ZIC2 lnc-KPTN-2 MEIS3 ZNF541 BICRA PRKD2 TMEM143 NAPA-AS1 lnc-BICRA-4 lnc-ZNF541-2 NAPA
GH19J047486 Enhancer 0.7 ENCODE dbSUPER 0.6 +3.3 3281 1.8 MYC MAX MNT RUNX3 ZFHX2 EBF1 POLR2A KPTN ENSG00000279861 lnc-KPTN-1 NAPA-AS1 NAPA
GH19J047479 Enhancer 0.6 ENCODE 0.6 -4.1 -4060 0.2 L3MBTL2 GMEB1 PKNOX1 HDAC1 NKRF MGA MBD2 USF1 MNT KLF8 NAPA-AS1 lnc-SLC8A2-1 KPTN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NAPA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NAPA-AS1 Gene

Genomic Locations for NAPA-AS1 Gene
chr19:47,484,269-47,501,597
(GRCh38/hg38)
Size:
17,329 bases
Orientation:
Plus strand
chr19:47,987,539-48,004,854
(GRCh37/hg19)
Size:
17,316 bases
Orientation:
Plus strand

Genomic View for NAPA-AS1 Gene

Genes around NAPA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NAPA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAPA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAPA-AS1 Gene

Proteins for NAPA-AS1 Gene

Post-translational modifications for NAPA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAPA-AS1 Gene

Domains & Families for NAPA-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NAPA-AS1 Gene

Function for NAPA-AS1 Gene

Phenotypes From GWAS Catalog for NAPA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAPA-AS1 Gene

Localization for NAPA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NAPA-AS1 Gene

Pathways & Interactions for NAPA-AS1 Gene

PathCards logo

SuperPathways for NAPA-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NAPA-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NAPA-AS1 Gene

Drugs & Compounds for NAPA-AS1 Gene

No Compound Related Data Available

Transcripts for NAPA-AS1 Gene

mRNA/cDNA for NAPA-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(3) LncBook transcripts :
(4) NONCODE transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for NAPA-AS1 Gene

No ASD Table

Relevant External Links for NAPA-AS1 Gene

GeneLoc Exon Structure for
NAPA-AS1
ECgene alternative splicing isoforms for
NAPA-AS1

Expression for NAPA-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NAPA-AS1 Gene

SOURCE GeneReport for Unigene cluster for NAPA-AS1 Gene:

Hs.657320
genes like me logo Genes that share expression patterns with NAPA-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAPA-AS1 Gene

Orthologs for NAPA-AS1 Gene

Evolution for NAPA-AS1 Gene

ENSEMBL:
Gene Tree for NAPA-AS1 (if available)
TreeFam:
Gene Tree for NAPA-AS1 (if available)

No data available for Orthologs for NAPA-AS1 Gene

Paralogs for NAPA-AS1 Gene

No data available for Paralogs for NAPA-AS1 Gene

Variants for NAPA-AS1 Gene

Sequence variations from dbSNP and Humsavar for NAPA-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs142867197 uncertain-significance, not specified, not provided, Mental retardation, autosomal recessive 41 47,483,973(+) C/G/T upstream_transcript_variant
rs549545571 uncertain-significance, not provided, Mental retardation, autosomal recessive 41 47,484,154(+) C/A/G/T upstream_transcript_variant
rs373139784 uncertain-significance, not provided 47,483,294(+) C/T upstream_transcript_variant
rs1000176028 -- 47,483,858(+) G/A upstream_transcript_variant
rs1000526554 -- 47,483,473(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NAPA-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2131971 CNV deletion 18987734
esv2718664 CNV deletion 23290073
esv2718665 CNV deletion 23290073
esv2758765 CNV loss 17122850
esv3346749 CNV duplication 20981092
esv3556493 CNV deletion 23714750
nsv1056887 CNV gain 25217958
nsv1116643 CNV deletion 24896259
nsv138407 CNV deletion 16902084
nsv428366 CNV loss 18775914
nsv579888 CNV gain 21841781
nsv953591 CNV deletion 24416366

Additional Variant Information for NAPA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAPA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NAPA-AS1 Gene

Disorders for NAPA-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for NAPA-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
mental retardation, autosomal recessive 41
  • mrt41
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for NAPA-AS1

genes like me logo Genes that share disorders with NAPA-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NAPA-AS1 Gene

Publications for NAPA-AS1 Gene

No publications were found for NAPA-AS1 Gene.

Products for NAPA-AS1 Gene

Sources for NAPA-AS1 Gene