Aliases for NANOGP3 Gene

Aliases for NANOGP3 Gene

  • Nanog Homeobox Pseudogene 3 2 3 5
  • NANOGP3 5

External Ids for NANOGP3 Gene

Previous GeneCards Identifiers for NANOGP3 Gene

  • GC06M053284
  • GC06U900427
  • GC06M053391

Summaries for NANOGP3 Gene

GeneCards Summary for NANOGP3 Gene

NANOGP3 (Nanog Homeobox Pseudogene 3) is a Pseudogene.

Additional gene information for NANOGP3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NANOGP3 Gene

Genomics for NANOGP3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NANOGP3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J053416 Enhancer 0.5 dbSUPER 600.7 +0.2 160 4 FOXA2 HNF4A RXRA CTCF SP1 NANOGP3 lnc-ELOVL5-5 RN7SKP256 lnc-ELOVL5-4 ELOVL5 GCLC MN298114-205
GH06J053436 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -20.1 -20053 6.8 CREB1 CTCF BACH1 JUND POLR2A REST RAD21 IKZF2 TRIM22 DPF2 RPL31P28 ELOVL5 piR-38580-284 NANOGP3 GCLC MN298114-205
GH06J053432 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 -14.3 -14294 1.8 GATAD2A REST TFE3 SOX13 NFKBIZ RCOR2 RXRB SP1 PBX2 CEBPA RPL31P28 ELOVL5 NANOGP3 piR-38580-284 GCLC MN298114-205
GH06J053425 Enhancer 0.9 Ensembl dbSUPER 0.4 -8.4 -8363 0.2 BACH1 JUND RELA TCF12 IKZF2 TRIM22 YY1 PKNOX1 EED ARID3A NANOGP3 piR-38580-284 ELOVL5 GCLC MN298114-205
GH06J053429 Enhancer 0.6 Ensembl dbSUPER 0.4 -11.0 -10963 0.6 IKZF2 TRIM22 TBX21 ATF7 MTA2 IKZF1 NANOGP3 piR-38580-284 ELOVL5 GCLC MN298114-205
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NANOGP3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NANOGP3 Gene

Genomic Locations for NANOGP3 Gene
chr6:53,418,452-53,418,738
(GRCh38/hg38)
Size:
287 bases
Orientation:
Minus strand
chr6:53,283,250-53,283,954
(GRCh37/hg19)
Size:
705 bases
Orientation:
Minus strand

Genomic View for NANOGP3 Gene

Genes around NANOGP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NANOGP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NANOGP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NANOGP3 Gene

Proteins for NANOGP3 Gene

Post-translational modifications for NANOGP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NANOGP3 Gene

Domains & Families for NANOGP3 Gene

Gene Families for NANOGP3 Gene

genes like me logo Genes that share domains with NANOGP3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NANOGP3 Gene

Function for NANOGP3 Gene

Phenotypes From GWAS Catalog for NANOGP3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NANOGP3 Gene

Localization for NANOGP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NANOGP3 Gene

Pathways & Interactions for NANOGP3 Gene

PathCards logo

SuperPathways for NANOGP3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NANOGP3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NANOGP3 Gene

Drugs & Compounds for NANOGP3 Gene

No Compound Related Data Available

Transcripts for NANOGP3 Gene

mRNA/cDNA for NANOGP3 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NANOGP3 Gene

No ASD Table

Relevant External Links for NANOGP3 Gene

GeneLoc Exon Structure for
NANOGP3

Expression for NANOGP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NANOGP3 Gene

genes like me logo Genes that share expression patterns with NANOGP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NANOGP3 Gene

Orthologs for NANOGP3 Gene

Evolution for NANOGP3 Gene

ENSEMBL:
Gene Tree for NANOGP3 (if available)
TreeFam:
Gene Tree for NANOGP3 (if available)

No data available for Orthologs for NANOGP3 Gene

Paralogs for NANOGP3 Gene

No data available for Paralogs for NANOGP3 Gene

Variants for NANOGP3 Gene

Additional Variant Information for NANOGP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NANOGP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NANOGP3 Gene

Disorders for NANOGP3 Gene

Additional Disease Information for NANOGP3

Genetic Association Database
(GAD)

No disorders were found for NANOGP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NANOGP3 Gene

Publications for NANOGP3 Gene

  1. Eleven daughters of NANOG. (PMID: 15233988) Booth HA … Holland PW (Genomics 2004) 3

Products for NANOGP3 Gene

Sources for NANOGP3 Gene