Aliases for NANOGP2 Gene

Aliases for NANOGP2 Gene

  • Nanog Homeobox Pseudogene 2 2 3 5
  • NANOGP4 3

External Ids for NANOGP2 Gene

Previous GeneCards Identifiers for NANOGP2 Gene

  • GC02U900703
  • GC02M223142
  • GC02M223024
  • GC02M223316

Summaries for NANOGP2 Gene

GeneCards Summary for NANOGP2 Gene

NANOGP2 (Nanog Homeobox Pseudogene 2) is a Pseudogene.

Additional gene information for NANOGP2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NANOGP2 Gene

Genomics for NANOGP2 Gene

GeneHancer (GH) Regulatory Elements for NANOGP2 Gene

Promoters and enhancers for NANOGP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J222448 Enhancer 0.8 FANTOM5 ENCODE 0.7 +4.5 4475 0.3 ZNF623 NR2F2 STAT3 TRIM28 FOS ZNF488 SP1 lnc-CCDC140-6 SGPP2 CT75 NANOGP2
GH02J222470 Enhancer 0.7 Ensembl ENCODE 0.4 -17.8 -17800 1 TRIM28 ZNF843 FEZF1 ZBTB12 NANOG ZNF596 PRDM10 ZNF580 RNU6-619P SGPP2 NANOGP2 lnc-CCDC140-6 RF00026-616
GH02J222467 Enhancer 0.3 Ensembl 0.4 -14.0 -14015 0.6 CREB1 GATA2 RNU6-619P SGPP2 CT75 NANOGP2 lnc-CCDC140-6 RF00026-616
GH02J222479 Enhancer 0.4 Ensembl 0.3 -26.4 -26415 0.2 JUND FOS ZNF366 SGPP2 RF00026-616 RNU6-619P NANOGP2 lnc-CCDC140-6
GH02J222480 Enhancer 0.3 Ensembl 0.3 -27.0 -27015 0.2 PRDM6 CT75 RF00026-616 RNU6-619P NANOGP2 lnc-CCDC140-6 SGPP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NANOGP2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NANOGP2 Gene

Genomic Locations for NANOGP2 Gene
chr2:222,452,042-222,453,486
(GRCh38/hg38)
Size:
1,445 bases
Orientation:
Minus strand
chr2:223,316,899-223,318,205
(GRCh37/hg19)
Size:
1,307 bases
Orientation:
Minus strand

Genomic View for NANOGP2 Gene

Genes around NANOGP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NANOGP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NANOGP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NANOGP2 Gene

Proteins for NANOGP2 Gene

Post-translational modifications for NANOGP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NANOGP2 Gene

Domains & Families for NANOGP2 Gene

Gene Families for NANOGP2 Gene

genes like me logo Genes that share domains with NANOGP2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NANOGP2 Gene

Function for NANOGP2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NANOGP2 Gene

Localization for NANOGP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NANOGP2 Gene

Pathways & Interactions for NANOGP2 Gene

PathCards logo

SuperPathways for NANOGP2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for NANOGP2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NANOGP2 Gene

Drugs & Compounds for NANOGP2 Gene

No Compound Related Data Available

Transcripts for NANOGP2 Gene

mRNA/cDNA for NANOGP2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NANOGP2 Gene

No ASD Table

Relevant External Links for NANOGP2 Gene

GeneLoc Exon Structure for
NANOGP2

Expression for NANOGP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NANOGP2 Gene

genes like me logo Genes that share expression patterns with NANOGP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NANOGP2 Gene

Orthologs for NANOGP2 Gene

Evolution for NANOGP2 Gene

ENSEMBL:
Gene Tree for NANOGP2 (if available)
TreeFam:
Gene Tree for NANOGP2 (if available)

No data available for Orthologs for NANOGP2 Gene

Paralogs for NANOGP2 Gene

No data available for Paralogs for NANOGP2 Gene

Variants for NANOGP2 Gene

Additional Variant Information for NANOGP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NANOGP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NANOGP2 Gene

Disorders for NANOGP2 Gene

No disorders were found for NANOGP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NANOGP2 Gene

Publications for NANOGP2 Gene

  1. Identification, cloning and expression analysis of the pluripotency promoting Nanog genes in mouse and human. (PMID: 15108323) Hart AH … Robb L (Developmental dynamics : an official publication of the American Association of Anatomists 2004) 2 3 54
  2. Eleven daughters of NANOG. (PMID: 15233988) Booth HA … Holland PW (Genomics 2004) 2 3 54
  3. Isolation of two X-linked mutants in Drosophila melanogaster which are sensitive to gamma-rays. (PMID: 414131) Nguyen TD … Boyd JB (Mutation research 1978) 3 54

Products for NANOGP2 Gene

Sources for NANOGP2 Gene