Aliases for NANOGP1 Gene

Aliases for NANOGP1 Gene

  • Nanog Homeobox Pseudogene 1 2 3 5
  • NANOG2 3 4
  • Putative Homeobox Protein NANOG2 4
  • Nanog-Like Protein 3
  • Nanog Homeobox 2 3

External Ids for NANOGP1 Gene

Previous GeneCards Identifiers for NANOGP1 Gene

  • GC12U900442
  • GC12P007917
  • GC12P008028
  • GC12P007876

Summaries for NANOGP1 Gene

GeneCards Summary for NANOGP1 Gene

NANOGP1 (Nanog Homeobox Pseudogene 1) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include sequence-specific DNA binding.

UniProtKB/Swiss-Prot Summary for NANOGP1 Gene

Additional gene information for NANOGP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NANOGP1 Gene

Genomics for NANOGP1 Gene

GeneHancer (GH) Regulatory Elements for NANOGP1 Gene

Promoters and enhancers for NANOGP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J007890 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 750.6 +1.2 1150 3.7 FOXA1 MLX SMARCE1 RBPJ CREB1 MIXL1 HLF SP1 ELF3 CEBPG SLC2A14 NANOGP1 FOXJ2 ENSG00000255356
GH12J007858 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.8 -30.3 -30311 3.4 CTCF ZNF362 CC2D1A RAD21 ZNF280D SP7 ZSCAN21 PRDM1 ZNF404 EGR1 ENSG00000241828 RPS20P29 lnc-NANOG-2 NANOGP1 SLC2A14 ENSG00000255356 LRRC23 DEFB109F FAM66C ATN1
GH12J007915 Promoter/Enhancer 1.1 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 12.9 +25.7 25699 1.8 POLR2A SLC2A14 NANOGP1 lnc-SLC2A14-2 lnc-NANOG-3
GH12J007863 Promoter/Enhancer 0.7 Ensembl ENCODE 12.9 -27.5 -27519 0.6 SREBF1 NFYC ZSCAN5C SLC2A14 NANOGP1 ENSG00000255356 DPPA3 RPS20P29 piR-32214-103
GH12J007834 Enhancer 0.8 FANTOM5 ENCODE 12.2 -55.8 -55828 0.9 CEBPG SP5 ZNF644 CEBPA RXRB ZNF205 FOXA2 CEBPB ZNF3 SLC2A3 FOXJ2 SLC2A14 NANOGP1 ENSG00000255356 DPPA3 CLEC4A NECAP1 ENSG00000287713 lnc-CLEC4C-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NANOGP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NANOGP1 Gene

Genomic Locations for NANOGP1 Gene
chr12:7,890,801-7,900,140
(GRCh38/hg38)
Size:
9,340 bases
Orientation:
Plus strand
chr12:8,028,871-8,052,736
(GRCh37/hg19)
Size:
23,866 bases
Orientation:
Plus strand

Genomic View for NANOGP1 Gene

Genes around NANOGP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NANOGP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NANOGP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NANOGP1 Gene

Proteins for NANOGP1 Gene

  • Protein details for NANOGP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7R0-NANG2_HUMAN
    Recommended name:
    Putative homeobox protein NANOG2
    Protein Accession:
    Q8N7R0

    Protein attributes for NANOGP1 Gene

    Size:
    232 amino acids
    Molecular mass:
    26880 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NANOGP1 Gene

Post-translational modifications for NANOGP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NANOGP1 Gene

Domains & Families for NANOGP1 Gene

Gene Families for NANOGP1 Gene

Protein Domains for NANOGP1 Gene

Suggested Antigen Peptide Sequences for NANOGP1 Gene

GenScript: Design optimal peptide antigens:
  • Putative homeobox protein NANOG2 (NANG2_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q8N7R0

UniProtKB/Swiss-Prot:

NANG2_HUMAN :
  • Belongs to the Nanog homeobox family.
Family:
  • Belongs to the Nanog homeobox family.
genes like me logo Genes that share domains with NANOGP1: view

Function for NANOGP1 Gene

Molecular function for NANOGP1 Gene

UniProtKB/Swiss-Prot Function:
Probable transcriptional regulator.

Gene Ontology (GO) - Molecular Function for NANOGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA 21873635
GO:0003700 DNA-binding transcription factor activity IBA 21873635
GO:0043565 sequence-specific DNA binding IBA 21873635
genes like me logo Genes that share ontologies with NANOGP1: view

Phenotypes for NANOGP1 Gene

genes like me logo Genes that share phenotypes with NANOGP1: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NANOGP1 Gene

Localization for NANOGP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NANOGP1 Gene

Gene Ontology (GO) - Cellular Components for NANOGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA 21873635
genes like me logo Genes that share ontologies with NANOGP1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for NANOGP1 Gene

Pathways & Interactions for NANOGP1 Gene

PathCards logo

SuperPathways for NANOGP1 Gene

No Data Available

Interacting Proteins for NANOGP1 Gene

Selected Interacting proteins: Q8N7R0-NANG2_HUMAN for NANOGP1 Gene via IID

Gene Ontology (GO) - Biological Process for NANOGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006357 regulation of transcription by RNA polymerase II IBA 21873635
genes like me logo Genes that share ontologies with NANOGP1: view

No data available for Pathways by source and SIGNOR curated interactions for NANOGP1 Gene

Drugs & Compounds for NANOGP1 Gene

No Compound Related Data Available

Transcripts for NANOGP1 Gene

mRNA/cDNA for NANOGP1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NANOGP1 Gene

No ASD Table

Relevant External Links for NANOGP1 Gene

GeneLoc Exon Structure for
NANOGP1
ECgene alternative splicing isoforms for
NANOGP1

Expression for NANOGP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NANOGP1 Gene

mRNA differential expression in normal tissues according to GTEx for NANOGP1 Gene

This gene is overexpressed in Testis (x18.6), Pancreas (x15.8), and Adrenal Gland (x12.9).

Protein differential expression in normal tissues from HIPED for NANOGP1 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NANOGP1 Gene



Protein tissue co-expression partners for NANOGP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of NANOGP1 Gene:

NANOGP1
genes like me logo Genes that share expression patterns with NANOGP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NANOGP1 Gene

Orthologs for NANOGP1 Gene

Evolution for NANOGP1 Gene

ENSEMBL:
Gene Tree for NANOGP1 (if available)
TreeFam:
Gene Tree for NANOGP1 (if available)

No data available for Orthologs for NANOGP1 Gene

Paralogs for NANOGP1 Gene

(3) SIMAP similar genes for NANOGP1 Gene using alignment to 1 proteins:

  • NANG2_HUMAN
genes like me logo Genes that share paralogs with NANOGP1: view

No data available for Paralogs for NANOGP1 Gene

Variants for NANOGP1 Gene

Additional Variant Information for NANOGP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NANOGP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NANOGP1 Gene

Disorders for NANOGP1 Gene

Additional Disease Information for NANOGP1

No disorders were found for NANOGP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NANOGP1 Gene

Publications for NANOGP1 Gene

  1. Eleven daughters of NANOG. (PMID: 15233988) Booth HA … Holland PW (Genomics 2004) 2 3 4 56
  2. Identification, cloning and expression analysis of the pluripotency promoting Nanog genes in mouse and human. (PMID: 15108323) Hart AH … Robb L (Developmental dynamics : an official publication of the American Association of Anatomists 2004) 2 3 4 56
  3. Evolution of the NANOG pseudogene family in the human and chimpanzee genomes. (PMID: 16469101) Fairbanks DJ … Maughan PJ (BMC evolutionary biology 2006) 3 4 56
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 56
  5. Antagonism between the transcription factors NANOG and OTX2 specifies rostral or caudal cell fate during neural patterning transition. (PMID: 29386354) Su Z … Pan G (The Journal of biological chemistry 2018) 3 56

Products for NANOGP1 Gene

Sources for NANOGP1 Gene