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Aliases for NAMA Gene

Subcategory (RNA class) for NAMA Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NAMA Gene

  • Non-Protein Coding RNA, Associated With MAP Kinase Pathway And Growth Arrest 2 3 5

External Ids for NAMA Gene

Previous GeneCards Identifiers for NAMA Gene

  • GC00U933022
  • GC09U901756
  • GC09M102119

Summaries for NAMA Gene

GeneCards Summary for NAMA Gene

NAMA (Non-Protein Coding RNA, Associated With MAP Kinase Pathway And Growth Arrest) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NAMA Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NAMA Gene

Genomics for NAMA Gene

GeneHancer (GH) Regulatory Elements for NAMA Gene

Promoters and enhancers for NAMA Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I099378 Enhancer 0.6 ENCODE 550.8 -1.4 -1434 0.1 SOX5 SOX13 FOXA2 MAFG THRB TEAD3 HNF1A RXRB NAMA ENSG00000234860
GH09I099367 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 5.3 +8.6 8600 2.3 TRIM22 DPF2 KLF5 ATF2 SP1 MEF2D BCL11A TARDBP IKZF1 NBN ENSG00000277465 NAMA GC09P099375
GH09I099357 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.4 +19.5 19473 0.2 JUND ATF3 HNF4A ENSG00000277828 NAMA KRT8P11
GH09I099356 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +20.5 20477 0.9 FOXA2 RXRA MAX MNT REST RAD21 FOXA1 GABPA YY1 JUND ENSG00000277828 KRT8P11 NAMA
GH09I099432 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.2 -56.6 -56624 1.8 PKNOX1 FOXA2 BATF IRF4 RARA ATF7 ETV6 RCOR1 FOS BCLAF1 NR4A3 TGFBR1 NAMA ENSG00000234860
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NAMA on UCSC Golden Path with GeneCards custom track

Genomic Locations for NAMA Gene

Genomic Locations for NAMA Gene
chr9:99,355,337-99,377,240
(GRCh38/hg38)
Size:
21,904 bases
Orientation:
Minus strand
chr9:102,117,619-102,139,522
(GRCh37/hg19)

Genomic View for NAMA Gene

Genes around NAMA on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NAMA Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAMA Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAMA Gene

Proteins for NAMA Gene

Post-translational modifications for NAMA Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAMA Gene

Domains & Families for NAMA Gene

Gene Families for NAMA Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NAMA: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NAMA Gene

Function for NAMA Gene

Phenotypes From GWAS Catalog for NAMA Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAMA Gene

Localization for NAMA Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NAMA Gene

Pathways & Interactions for NAMA Gene

No Data Available

Interacting Proteins for NAMA Gene

Gene Ontology (GO) - Biological Process for NAMA Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NAMA Gene

Drugs & Compounds for NAMA Gene

No Compound Related Data Available

Transcripts for NAMA Gene

mRNA/cDNA for NAMA Gene

(2) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NAMA Gene

Non-protein coding RNA, associated with MAP kinase pathway and growth arrest:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NAMA Gene

No ASD Table

Relevant External Links for NAMA Gene

GeneLoc Exon Structure for
NAMA
ECgene alternative splicing isoforms for
NAMA

Expression for NAMA Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NAMA Gene

mRNA differential expression in normal tissues according to GTEx for NAMA Gene

This gene is overexpressed in Testis (x6.4).

NURSA nuclear receptor signaling pathways regulating expression of NAMA Gene:

NAMA

SOURCE GeneReport for Unigene cluster for NAMA Gene:

Hs.745280
genes like me logo Genes that share expression patterns with NAMA: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAMA Gene

Orthologs for NAMA Gene

Evolution for NAMA Gene

ENSEMBL:
Gene Tree for NAMA (if available)
TreeFam:
Gene Tree for NAMA (if available)

No data available for Orthologs for NAMA Gene

Paralogs for NAMA Gene

No data available for Paralogs for NAMA Gene

Variants for NAMA Gene

Sequence variations from dbSNP and Humsavar for NAMA Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000056422 -- 99,366,912(-) C/G intron_variant
rs1000143806 -- 99,359,650(-) A/G intron_variant
rs1000166575 -- 99,358,714(-) C/T intron_variant
rs1000236523 -- 99,360,962(-) C/T intron_variant
rs1000296383 -- 99,367,232(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NAMA Gene

Variant ID Type Subtype PubMed ID
nsv831667 CNV gain 17160897
nsv1046898 CNV gain 25217958
esv3621214 CNV gain 21293372

Additional Variant Information for NAMA Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAMA

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NAMA Gene

Disorders for NAMA Gene

Additional Disease Information for NAMA

No disorders were found for NAMA Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAMA Gene

Publications for NAMA Gene

  1. Identification of a novel noncoding RNA gene, NAMA, that is downregulated in papillary thyroid carcinoma with BRAF mutation and associated with growth arrest. (PMID: 17415708) Yoon H … Chapelle Ade L (International journal of cancer 2007) 2 3 58
  2. BRAF-Activated Long Noncoding RNA Modulates Papillary Thyroid Carcinoma Cell Proliferation through Regulating Thyroid Stimulating Hormone Receptor. (PMID: 26323637) Zheng H … Xu J (Cancer research and treatment : official journal of Korean Cancer Association 2016) 3 58
  3. Genetics of callous-unemotional behavior in children. (PMID: 23874384) Viding E … Plomin R (PloS one 2013) 3 58

Products for NAMA Gene

Sources for NAMA Gene

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