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Aliases for NALCN-AS1 Gene

Subcategory (RNA class) for NALCN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NALCN-AS1 Gene

  • NALCN Antisense RNA 1 2 3 5
  • NALCN Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NALCN-AS1 Gene

Previous GeneCards Identifiers for NALCN-AS1 Gene

  • GC00U933572
  • GC13P101361

Summaries for NALCN-AS1 Gene

GeneCards Summary for NALCN-AS1 Gene

NALCN-AS1 (NALCN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NALCN-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NALCN-AS1 Gene

Genomics for NALCN-AS1 Gene

GeneHancer (GH) Regulatory Elements for NALCN-AS1 Gene

Promoters and enhancers for NALCN-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I100724 Enhancer 0.5 ENCODE 0.4 +16.5 16457 0.2 SMARCE1 ZNF217 GATA3 DPF2 NALCN-AS1 ARF4P3 GC13P100660
GH13I100789 Enhancer 0.5 ENCODE 0.2 +81.3 81341 0.1 SOX13 FOXA2 FOXA3 SCRT2 GC13P100809 ARF4P3 NALCN-AS1 GC13P100660
GH13I100875 Enhancer 0.7 ENCODE 0.1 +167.7 167707 1.6 MEIS2 PKNOX1 JUN FEZF1 BATF FOSL1 POLR2A ZNF366 FOS IKZF2 GC13P100867 GC13M100877 NALCN-AS1 GC13P100660
GH13I100808 Enhancer 0.7 ENCODE 0.1 +100.2 100217 0.2 SOX13 TFAP4 FOXA2 ZNF644 RARA TEAD3 GATAD1 NR2F6 CREM GATAD2A GC13P100809 ARF4P3 NALCN-AS1 GC13P100660
GH13I100796 Enhancer 0.3 ENCODE 0.2 +88.3 88337 0.2 SP1 GC13P100809 ARF4P3 NALCN-AS1 GC13P100660
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NALCN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NALCN-AS1 Gene

Genomic Locations for NALCN-AS1 Gene
chr13:100,708,325-101,059,286
(GRCh38/hg38)
Size:
350,962 bases
Orientation:
Plus strand
chr13:101,360,579-101,711,638
(GRCh37/hg19)

Genomic View for NALCN-AS1 Gene

Genes around NALCN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NALCN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NALCN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NALCN-AS1 Gene

Proteins for NALCN-AS1 Gene

Post-translational modifications for NALCN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NALCN-AS1 Gene

Domains & Families for NALCN-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NALCN-AS1 Gene

Function for NALCN-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NALCN-AS1 Gene

Localization for NALCN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NALCN-AS1 Gene

Pathways & Interactions for NALCN-AS1 Gene

SuperPathways for NALCN-AS1 Gene

No Data Available

Interacting Proteins for NALCN-AS1 Gene

Gene Ontology (GO) - Biological Process for NALCN-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NALCN-AS1 Gene

Drugs & Compounds for NALCN-AS1 Gene

No Compound Related Data Available

Transcripts for NALCN-AS1 Gene

mRNA/cDNA for NALCN-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NALCN-AS1 Gene

NALCN antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NALCN-AS1 Gene

No ASD Table

Relevant External Links for NALCN-AS1 Gene

GeneLoc Exon Structure for
NALCN-AS1
ECgene alternative splicing isoforms for
NALCN-AS1

Expression for NALCN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NALCN-AS1 Gene

SOURCE GeneReport for Unigene cluster for NALCN-AS1 Gene:

Hs.602949
genes like me logo Genes that share expression patterns with NALCN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NALCN-AS1 Gene

Orthologs for NALCN-AS1 Gene

Evolution for NALCN-AS1 Gene

ENSEMBL:
Gene Tree for NALCN-AS1 (if available)
TreeFam:
Gene Tree for NALCN-AS1 (if available)

No data available for Orthologs for NALCN-AS1 Gene

Paralogs for NALCN-AS1 Gene

No data available for Paralogs for NALCN-AS1 Gene

Variants for NALCN-AS1 Gene

Sequence variations from dbSNP and Humsavar for NALCN-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs78817184 likely-benign, not specified 101,057,985(+) G/A/C non_coding_transcript_variant
rs1000002805 -- 101,054,727(+) T/C intron_variant
rs1000005578 -- 100,709,113(+) T/C intron_variant
rs1000007412 -- 100,891,498(+) A/C intron_variant
rs1000013981 -- 100,961,940(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NALCN-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2747895 CNV deletion 23290073
esv2747894 CNV deletion 23290073
esv2747893 CNV deletion 23290073
esv2747892 CNV deletion 23290073
esv2747891 CNV deletion 23290073
esv2747888 CNV deletion 23290073
esv2747887 CNV deletion 23290073
esv2747886 CNV deletion 23290073
esv2747884 CNV deletion 23290073
esv2747883 CNV deletion 23290073
esv2296977 CNV deletion 18987734
esv2206104 CNV deletion 18987734
esv1774079 CNV deletion 17803354
dgv3363n54 CNV gain 21841781
nsv951911 CNV duplication 24416366
nsv832699 CNV gain 17160897
nsv826768 CNV loss 20364138
nsv7247 OTHER inversion 18451855
nsv562959 CNV loss 21841781
nsv562958 CNV loss 21841781
nsv562955 CNV gain 21841781
nsv524376 CNV gain 19592680
nsv514687 CNV gain 21397061
nsv456095 CNV gain 19166990
nsv456094 CNV gain 19166990
nsv1149 CNV deletion 18451855
nsv1148 CNV insertion 18451855
nsv1147 CNV deletion 18451855
nsv1141477 CNV deletion 24896259
esv3633353 CNV loss 21293372
esv3633352 CNV loss 21293372
esv3633351 CNV loss 21293372
esv3633350 CNV loss 21293372
esv3633349 CNV loss 21293372
esv3421495 CNV insertion 20981092
esv3409774 CNV insertion 20981092
esv3376135 CNV insertion 20981092
esv3329889 CNV insertion 20981092
esv3309602 CNV mobile element insertion 20981092

Additional Variant Information for NALCN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NALCN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NALCN-AS1 Gene

Disorders for NALCN-AS1 Gene

Additional Disease Information for NALCN-AS1

No disorders were found for NALCN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NALCN-AS1 Gene

Publications for NALCN-AS1 Gene

  1. A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder. (PMID: 20889312) Wang KS … Aragam N (Schizophrenia research 2010) 3 58

Products for NALCN-AS1 Gene

Sources for NALCN-AS1 Gene

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