Aliases for NAGPA-AS1 Gene

Subcategory (RNA class) for NAGPA-AS1 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for NAGPA-AS1 Gene

  • NAGPA Antisense RNA 1 2 3 5
  • NAGPA Antisense RNA 1 (Non-Protein Coding) 2 3
  • HSALNG0109301 167
  • NAGPA-AS1 2

External Ids for NAGPA-AS1 Gene

Previous GeneCards Identifiers for NAGPA-AS1 Gene

  • GC16P005085

Summaries for NAGPA-AS1 Gene

GeneCards Summary for NAGPA-AS1 Gene

NAGPA-AS1 (NAGPA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NAGPA-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NAGPA-AS1 Gene

Genomics for NAGPA-AS1 Gene

GeneHancer (GH) Regulatory Elements for NAGPA-AS1 Gene

Promoters and enhancers for NAGPA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J005010 Enhancer 0.5 dbSUPER 500.7 +0.7 677 2.3 USF1 RAD21 CTCF ZFP64 NR2F6 SMC3 RBM39 ELF1 NAGPA-AS1 SEC14L5 NAGPA lnc-C16orf89-2
GH16J005032 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +23.9 23866 5.5 RXRA EP300 FOXK2 ZNF217 SIN3A TCF12 POLR2G USF1 SP1 NCOR1 NAGPA ALG1 lnc-NAGPA-1 ZNF500 ANKS3 C16orf89 CDIP1 PPL GLYR1 UBN1
GH16J005015 Enhancer 0.6 dbSUPER 0.7 +4.8 4829 1.3 USF1 TBX3 USF2 KDM1A HLF L3MBTL2 NFYC RAD51 CEBPB ZNF24 NAGPA-AS1 lnc-C16orf89-2 SEC14L5
GH16J005041 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +31.2 31159 2.1 CTCF JUND FOS REST CREB1 RAD21 SAP130 MEF2B CREM BATF C16orf89 NAGPA ALG1 lnc-NAGPA-1 NAGPA-AS1
GH16J005025 Enhancer 0.8 ENCODE dbSUPER 0.4 +14.6 14606 0.2 CTCF GABPA REST NFIC RAD21 YY1 TAF15 NFIB GLIS1 AGO2 C16orf89 GLYR1 UBN1 SEC14L5 lnc-C16orf89-2 NAGPA NAGPA-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NAGPA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NAGPA-AS1 Gene

Genomic Locations for NAGPA-AS1 Gene
chr16:5,010,909-5,043,999
(GRCh38/hg38)
Size:
33,091 bases
Orientation:
Plus strand
chr16:5,083,703-5,092,972
(GRCh37/hg19)
Size:
9,270 bases
Orientation:
Plus strand

Genomic View for NAGPA-AS1 Gene

Genes around NAGPA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NAGPA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAGPA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAGPA-AS1 Gene

Proteins for NAGPA-AS1 Gene

Post-translational modifications for NAGPA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAGPA-AS1 Gene

Domains & Families for NAGPA-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NAGPA-AS1 Gene

Function for NAGPA-AS1 Gene

Phenotypes From GWAS Catalog for NAGPA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAGPA-AS1 Gene

Localization for NAGPA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NAGPA-AS1 Gene

Pathways & Interactions for NAGPA-AS1 Gene

PathCards logo

SuperPathways for NAGPA-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for NAGPA-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NAGPA-AS1 Gene

Drugs & Compounds for NAGPA-AS1 Gene

No Compound Related Data Available

Transcripts for NAGPA-AS1 Gene

mRNA/cDNA for NAGPA-AS1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for NAGPA-AS1 Gene

No ASD Table

Relevant External Links for NAGPA-AS1 Gene

GeneLoc Exon Structure for
NAGPA-AS1

Expression for NAGPA-AS1 Gene

SOURCE GeneReport for Unigene cluster for NAGPA-AS1 Gene:

Hs.729936
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAGPA-AS1 Gene

Orthologs for NAGPA-AS1 Gene

Evolution for NAGPA-AS1 Gene

ENSEMBL:
Gene Tree for NAGPA-AS1 (if available)
TreeFam:
Gene Tree for NAGPA-AS1 (if available)

No data available for Orthologs for NAGPA-AS1 Gene

Paralogs for NAGPA-AS1 Gene

No data available for Paralogs for NAGPA-AS1 Gene

Variants for NAGPA-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for NAGPA-AS1 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
717404 Benign: not provided 5,033,832(+) G/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
793359 Likely Benign: not provided 5,033,882(+) G/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for NAGPA-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for NAGPA-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2422516 CNV deletion 17116639
esv25186 CNV gain 19812545
esv2760069 CNV gain+loss 17122850
esv34300 CNV gain 17911159
esv3637713 CNV gain 21293372
esv3637714 CNV gain 21293372
esv3892762 CNV gain 25118596
nsv1038475 CNV gain 25217958
nsv1039432 CNV loss 25217958
nsv1042612 CNV loss 25217958
nsv1046986 CNV gain 25217958
nsv1052766 CNV loss 25217958
nsv1722 CNV deletion 18451855
nsv428318 CNV gain 18775914
nsv457360 CNV loss 19166990
nsv571303 CNV loss 21841781
nsv817715 CNV gain 17921354

Additional Variant Information for NAGPA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAGPA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NAGPA-AS1 Gene

Disorders for NAGPA-AS1 Gene

Additional Disease Information for NAGPA-AS1

No disorders were found for NAGPA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAGPA-AS1 Gene

Publications for NAGPA-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for NAGPA-AS1 Gene

Products for NAGPA-AS1 Gene

Sources for NAGPA-AS1 Gene