Aliases for NAGPA-AS1 Gene

Data sources for NAGPA-AS1 Gene:

Subcategory (RNA class) for NAGPA-AS1 Gene

lncRNA

Aliases for NAGPA-AS1 Gene

External Ids for NAGPA-AS1 Gene

Previous GeneCards Identifiers for NAGPA-AS1 Gene

  • GC16P005085

Summaries for NAGPA-AS1 Gene

GeneCards Summary for NAGPA-AS1 Gene

NAGPA-AS1 (NAGPA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NAGPA-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NAGPA-AS1 Gene

Genomics for NAGPA-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NAGPA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J005032 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.3 +23.9 23866 5.5 CHD2 TBP SP1 MXD4 FEZF1 CEBPA SIX5 NR2C1 FOXA1 MNT NAGPA ALG1 lnc-NAGPA-1 NAGPA-AS1 ZNF500 C16orf89 PPL GLYR1 UBN1
GH16J005010 Enhancer 0.5 dbSUPER 250.7 +0.7 677 2.3 ZFP64 CTCF RAD21 NR2F6 SMC3 USF1 NAGPA-AS1 SEC14L5 NAGPA lnc-C16orf89-2 ALG1 PPL
GH16J005026 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +14.5 14492 0.8 CTCF REST YY1 RAD21 FOXA1 HNF4A GLIS1 NFIB ARID3A CREB1 C16orf89 GLYR1 UBN1 NAGPA SEC14L5 lnc-C16orf89-2 ALG1 NAGPA-AS1 PPL
GH16J005015 Enhancer 0.5 dbSUPER 0.7 +4.8 4829 1.3 RAD51 NFYC USF2 L3MBTL2 HLF KDM1A ZNF24 USF1 NAGPA-AS1 lnc-C16orf89-2 ALG1 PPL SEC14L5
GH16J005041 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +31.2 31159 2.1 CTCF REST SAP130 ETV4 BCL6 JUND RAD21 CREM BATF MAZ C16orf89 NAGPA ALG1 lnc-NAGPA-1 NAGPA-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NAGPA-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NAGPA-AS1 Gene

Latest Assembly
chr16:5,010,909-5,043,999
(GRCh38/hg38)
Size:
33,091 bases
Orientation:
Plus strand

Previous Assembly
chr16:5,083,703-5,092,972
(GRCh37/hg19 by Entrez Gene)
Size:
9,270 bases
Orientation:
Plus strand

chr16:5,060,910-5,092,251
(GRCh37/hg19 by Ensembl)
Size:
31,342 bases
Orientation:
Plus strand

Genomic View for NAGPA-AS1 Gene

Genes around NAGPA-AS1 on UCSC Golden Path with GeneCards custom track
NAGPA-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NAGPA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAGPA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAGPA-AS1 Gene

Proteins for NAGPA-AS1 Gene

Post-translational modifications for NAGPA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAGPA-AS1 Gene

Domains & Families for NAGPA-AS1 Gene

Gene Families for NAGPA-AS1 Gene

genes like me logo Genes that share domains with NAGPA-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NAGPA-AS1 Gene

Function for NAGPA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAGPA-AS1 Gene

Localization for NAGPA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NAGPA-AS1 Gene

Pathways & Interactions for NAGPA-AS1 Gene

PathCards logo

SuperPathways for NAGPA-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NAGPA-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NAGPA-AS1 Gene

Drugs & Compounds for NAGPA-AS1 Gene

No Compound Related Data Available

Transcripts for NAGPA-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NAGPA-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BE51B_9606 lncRNA 2265 2

Ensembl: ENST00000632058 (view in UCSC) ,

LncBook: HSALNT0227179,

URS000075EA71_9606 lncRNA 1237 2

RefSeq: NR_038913,

LncBook: HSALNT0227180,

URS0000811EF6_9606 lncRNA 521 2

Ensembl: ENST00000588778 (view in UCSC) ,

LncBook: HSALNT0227177,

URS0001BDF020_9606 lncRNA 2265 1

LncBook: HSALNT0227179,

URS0001BEDFBE_9606 lncRNA 1237 1

LncBook: HSALNT0227180,

NAGPA-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NAGPA-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NAGPA-AS1 Gene

No ASD Table

Relevant External Links for NAGPA-AS1 Gene

GeneLoc Exon Structure for
NAGPA-AS1

Expression for NAGPA-AS1 Gene

SOURCE GeneReport for Unigene cluster for NAGPA-AS1 Gene:

Hs.729936
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAGPA-AS1 Gene

Orthologs for NAGPA-AS1 Gene

Evolution for NAGPA-AS1 Gene

ENSEMBL:
Gene Tree for NAGPA-AS1 (if available)
TreeFam:
Gene Tree for NAGPA-AS1 (if available)

No data available for Orthologs for NAGPA-AS1 Gene

Paralogs for NAGPA-AS1 Gene

No data available for Paralogs for NAGPA-AS1 Gene

Variants for NAGPA-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for NAGPA-AS1 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
rs577968497 Likely Benign: not provided 5,033,882(+) G/T
NM_016256.4(NAGPA):c.33C>A (p.Leu11=)
NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS
rs74952829 Benign: not provided 5,033,832(+) G/A
NM_016256.4(NAGPA):c.83C>T (p.Ser28Leu)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for NAGPA-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for NAGPA-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2422516 CNV deletion 17116639
esv25186 CNV gain 19812545
esv2760069 CNV gain+loss 17122850
esv34300 CNV gain 17911159
esv3637713 CNV gain 21293372
esv3637714 CNV gain 21293372
esv3892762 CNV gain 25118596
nsv1038475 CNV gain 25217958
nsv1039432 CNV loss 25217958
nsv1042612 CNV loss 25217958
nsv1046986 CNV gain 25217958
nsv1052766 CNV loss 25217958
nsv1722 CNV deletion 18451855
nsv428318 CNV gain 18775914
nsv457360 CNV loss 19166990
nsv571303 CNV loss 21841781
nsv817715 CNV gain 17921354

Additional Variant Information for NAGPA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAGPA-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NAGPA-AS1 Gene

Disorders for NAGPA-AS1 Gene

Additional Disease Information for NAGPA-AS1

No disorders were found for NAGPA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAGPA-AS1 Gene

Publications for NAGPA-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for NAGPA-AS1 Gene

Products for NAGPA-AS1 Gene

Sources for NAGPA-AS1 Gene