Aliases for NADK2-AS1 Gene

Subcategory (RNA class) for NADK2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for NADK2-AS1 Gene

  • NADK2 Antisense RNA 1 2 3 5
  • NADK2-AS1 2 5 165
  • NADKD1 Antisense RNA 1 2 3
  • NONHSAG040189.2 91
  • HSALNG0041184 164
  • NADKD1-AS1 3

External Ids for NADK2-AS1 Gene

Previous HGNC Symbols for NADK2-AS1 Gene

  • NADKD1-AS1

Summaries for NADK2-AS1 Gene

GeneCards Summary for NADK2-AS1 Gene

NADK2-AS1 (NADK2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NADK2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NADK2-AS1 Gene

Genomics for NADK2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NADK2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J036222 Enhancer 0.2 Ensembl 600.7 +1.8 1846 0.2 NADK2-AS1 RNU6-1305P NADK2 SKP2
GH05J036238 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.8 +20.4 20401 5.1 RNF2 SP1 CREB1 GATAD2A CTCF HNRNPL PRDM10 REST ZNF629 TFE3 NADK2 NIPBL OFD1P17 RANBP3L NADK2-AS1 SLC1A3 SKP2
GH05J036873 Promoter/Enhancer 2.6 UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.3 +656.4 656446 8.2 HNRNPL CTCF TEAD4 PRDM10 ZNF629 LEF1 IKZF1 ZNF692 POLR2A BACH1 NIPBL NIPBL-DT WDR70 NUP155 CPLANE1 NADK2-AS1 ENSG00000250155 lnc-NIPBL-1
GH05J036739 Enhancer 1.3 FANTOM5 Ensembl ENCODE 19.9 +519.4 519399 2.7 CTCF PRDM10 LEF1 IKZF1 ZNF692 JUND ZNF143 PKNOX1 PATZ1 REST lnc-C5orf42-7 WDR70 NIPBL NADK2-AS1 NUP155 SKP2 ENSG00000250155 OFD1P17 LOC107986412 SLC1A3
GH05J036605 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.4 +386.7 386746 4.8 PRDM10 ZNF629 ZNF692 POLR2A PRDM1 RELA ZIC2 ZSCAN4 PATZ1 IKZF2 SLC1A3 lnc-RANBP3L-5 CPLANE1 SKP2 NADK2-AS1 NUP155 OFD1P17 WDR70 ENSG00000272103 ENSG00000274441
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NADK2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NADK2-AS1 Gene

Genomic Locations for NADK2-AS1 Gene
chr5:36,221,055-36,221,903
(GRCh38/hg38)
Size:
849 bases
Orientation:
Plus strand
chr5:36,221,157-36,222,004
(GRCh37/hg19)
Size:
848 bases
Orientation:
Plus strand

Genomic View for NADK2-AS1 Gene

Genes around NADK2-AS1 on UCSC Golden Path with GeneCards custom track
NADK2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
NADK2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NADK2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for NADK2-AS1 Gene

Proteins for NADK2-AS1 Gene

Post-translational modifications for NADK2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NADK2-AS1 Gene

Domains & Families for NADK2-AS1 Gene

Gene Families for NADK2-AS1 Gene

genes like me logo Genes that share domains with NADK2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NADK2-AS1 Gene

Function for NADK2-AS1 Gene

Phenotypes From GWAS Catalog for NADK2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NADK2-AS1 Gene

Localization for NADK2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NADK2-AS1 Gene

Pathways & Interactions for NADK2-AS1 Gene

PathCards logo

SuperPathways for NADK2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NADK2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NADK2-AS1 Gene

Drugs & Compounds for NADK2-AS1 Gene

No Compound Related Data Available

Transcripts for NADK2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NADK2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005A2B69_9606 lncRNA 720 5

HGNC: 41143,

Ensembl: ENST00000501794 (view in UCSC) ,

LncBook: HSALNT0086599,

LNCipedia: NADK2-AS1:1,

NONCODE: NONHSAT101031.2,

URS00009BEA43_9606 lncRNA 720 2

LncBook: HSALNT0086600,

NONCODE: NONHSAT202494.1,

NADK2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NADK2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NADK2-AS1 Gene

No ASD Table

Relevant External Links for NADK2-AS1 Gene

GeneLoc Exon Structure for
NADK2-AS1

Expression for NADK2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NADK2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NADK2-AS1 Gene

This gene is overexpressed in Liver (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NADK2-AS1

genes like me logo Genes that share expression patterns with NADK2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NADK2-AS1 Gene

Orthologs for NADK2-AS1 Gene

Evolution for NADK2-AS1 Gene

ENSEMBL:
Gene Tree for NADK2-AS1 (if available)
TreeFam:
Gene Tree for NADK2-AS1 (if available)

No data available for Orthologs for NADK2-AS1 Gene

Paralogs for NADK2-AS1 Gene

No data available for Paralogs for NADK2-AS1 Gene

Variants for NADK2-AS1 Gene

Additional Variant Information for NADK2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NADK2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NADK2-AS1 Gene

Disorders for NADK2-AS1 Gene

No disorders were found for NADK2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NADK2-AS1 Gene

Publications for NADK2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for NADK2-AS1 Gene

Sources for NADK2-AS1 Gene