Aliases for NAA60 Gene
Aliases for NAA60 Gene
External Ids for NAA60 Gene
- HGNC: 25875
- Entrez Gene: 79903
- Ensembl: ENSG00000122390
- OMIM: 614246
- UniProtKB: Q9H7X0
Previous HGNC Symbols for NAA60 Gene
- NAT15
Previous GeneCards Identifiers for NAA60 Gene
- GC16P003495
Summaries for NAA60 Gene
-
This gene encodes an enzyme that localizes to the Golgi apparatus, where it transfers an acetyl group to the N-terminus of free proteins. This enzyme acts on histones, and its activity is important for chromatin assembly and chromosome integrity. Alternative splicing and the use of alternative promoters results in multiple transcript variants. The upstream promoter is located in a differentially methylated region (DMR) and undergoes imprinting; transcript variants originating from this position are expressed from the maternal allele. [provided by RefSeq, Nov 2015]
GeneCards Summary for NAA60 Gene
NAA60 (N(Alpha)-Acetyltransferase 60, NatF Catalytic Subunit) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include transferase activity, transferring acyl groups other than amino-acyl groups and peptide alpha-N-acetyltransferase activity.
UniProtKB/Swiss-Prot for NAA60 Gene
-
N-alpha-acetyltransferase that specifically mediates the acetylation of N-terminal residues of the transmembrane proteins, with a strong preference for N-termini facing the cytosol (PubMed:25732826). Displays N-terminal acetyltransferase activity towards a range of N-terminal sequences including those starting with Met-Lys, Met-Val, Met-Ala and Met-Met (PubMed:21750686, PubMed:25732826, PubMed:27550639, PubMed:27320834). Required for normal chromosomal segregation during anaphase (PubMed:21750686). May also show histone acetyltransferase activity; such results are however unclear in vivo and would require additional experimental evidences (PubMed:21981917).
Additional gene information for NAA60 Gene
- Monarch Initiative
- Search for NAA60 at DataMed
- Search for NAA60 at HumanCyc
No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NAA60 Gene
Genomics for NAA60 Gene
GeneHancer (GH) Regulatory Elements for NAA60 Gene
Promoters and enhancers for NAA60 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around NAA60 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for NAA60 Gene
Genomic Locations for NAA60 Gene
- chr16:3,443,611-3,486,963
- (GRCh38/hg38)
- Size:
- 43,353 bases
- Orientation:
- Plus strand
- chr16:3,493,611-3,536,963
- (GRCh37/hg19)
Genomic View for NAA60 Gene
Genes around NAA60 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 16p13.3 by Ensembl
- 16p13.3 by Entrez Gene
- 16p13.3 by HGNC
NAA60 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for NAA60 Gene
Proteins for NAA60 Gene
-
Protein details for NAA60 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9H7X0-NAA60_HUMAN
- Recommended name:
- N-alpha-acetyltransferase 60
- Protein Accession:
- Q9H7X0
- B3KRQ0
- B4DLZ0
- B4DPZ8
- B4DYC4
- D3DUC2
- E7EQ65
- Q6IA31
- Q6UX26
Protein attributes for NAA60 Gene
- Size:
- 242 amino acids
- Molecular mass:
- 27451 Da
- Quaternary structure:
-
- Monomer and homodimer; monomer in presence of substrate and homodimer in its absence (PubMed:27320834).
Three dimensional structures from OCA and Proteopedia for NAA60 Gene
Protein Expression for NAA60 Gene
Post-translational modifications for NAA60 Gene
- Acetylated: autoacetylation is required for optimal acetyltransferase activity.
- Modification sites at PhosphoSitePlus
- Modification sites at neXtProt
Other Protein References for NAA60 Gene
- ENSEMBL proteins:
-
- ENSP00000354108
- ENSP00000385903
- ENSP00000393224
- ENSP00000401237
- ENSP00000405873
- ENSP00000458505
- ENSP00000458575
- ENSP00000458667
- ENSP00000458717
- ENSP00000458928
- ENSP00000459055
- ENSP00000459057
- ENSP00000459084
- ENSP00000459188
- ENSP00000459275
- ENSP00000459544
- ENSP00000459750
- ENSP00000459790
- ENSP00000460763
- ENSP00000461438
- ENSP00000461443
- ENSP00000461507
- ENSP00000461703
- ENSP00000461730
- ENSP00000482351
- REFSEQ proteins:
Antibody Products
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-
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-
Abcam proteins for NAA60
Assay Products
No data available for DME Specific Peptides for NAA60 Gene
Domains & Families for NAA60 Gene
Gene Families for NAA60 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Enzymes
- Predicted intracellular proteins
Protein Domains for NAA60 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for NAA60 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9H7X0- Family:
-
- Belongs to the acetyltransferase family. NAA60 subfamily.
Function for NAA60 Gene
Molecular function for NAA60 Gene
- UniProtKB/Swiss-Prot CatalyticActivity:
- Acetyl-CoA + an N-terminal-L-methionyl-[transmembrane protein] = an N-terminal-N(alpha)-acetyl-L-methionyl-[transmembrane protein] + CoA.
- UniProtKB/Swiss-Prot CatalyticActivity:
- Acetyl-CoA + [protein]-L-lysine = CoA + [protein]-N(6)-acetyl-L-lysine.
- UniProtKB/Swiss-Prot Function:
- N-alpha-acetyltransferase that specifically mediates the acetylation of N-terminal residues of the transmembrane proteins, with a strong preference for N-termini facing the cytosol (PubMed:25732826). Displays N-terminal acetyltransferase activity towards a range of N-terminal sequences including those starting with Met-Lys, Met-Val, Met-Ala and Met-Met (PubMed:21750686, PubMed:25732826, PubMed:27550639, PubMed:27320834). Required for normal chromosomal segregation during anaphase (PubMed:21750686). May also show histone acetyltransferase activity; such results are however unclear in vivo and would require additional experimental evidences (PubMed:21981917).
- UniProtKB/Swiss-Prot Induction:
- Isoform 2: Imprinted (PubMed:21593219). Promoter methylation of the paternal allele may restrict expression to the maternal allele in placenta and leukocytes (PubMed:21593219). Isoform 1: Biallelically expressed (PubMed:21593219).
Enzyme Numbers (IUBMB) for NAA60 Gene
Phenotypes From GWAS Catalog for NAA60 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004402 | histone acetyltransferase activity | IEA | -- |
| GO:0004596 | peptide alpha-N-acetyltransferase activity | IDA | 21750686 |
| GO:0008080 | N-acetyltransferase activity | IEA | -- |
| GO:0010485 | H4 histone acetyltransferase activity | IDA | 21981917 |
| GO:0016740 | transferase activity | IEA | -- |
Phenotypes for NAA60 Gene
- GenomeRNAi human phenotypes for NAA60:
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miRNA for NAA60 Gene
- miRTarBase miRNAs that target NAA60
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-
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- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
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-
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No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NAA60 Gene
Localization for NAA60 Gene
Subcellular locations from UniProtKB/Swiss-Prot for NAA60 Gene
- Golgi apparatus membrane; Peripheral membrane protein; Cytoplasmic side. Note=Probably forms a intramembrane hairpin-like structure in the membrane. {ECO:0000305 PubMed:25732826}.
| Compartment | Confidence |
|---|---|
| golgi apparatus | 5 |
| cytoskeleton | 4 |
| cytosol | 3 |
- Actin filaments (1)
- Cytosol (1)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IDA | 21981917 |
| GO:0005794 | Golgi apparatus | IEA | -- |
| GO:0016020 | membrane | IEA | -- |
Pathways & Interactions for NAA60 Gene
No Data Available
Interacting Proteins for NAA60 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006334 | nucleosome assembly | IDA | 21981917 |
| GO:0006474 | N-terminal protein amino acid acetylation | IDA | 25732826 |
| GO:0007059 | chromosome segregation | ISS,IBA | -- |
| GO:0008283 | cell proliferation | IMP | 21981917 |
| GO:0016569 | covalent chromatin modification | IEA | -- |
No data available for Pathways by source and SIGNOR curated interactions for NAA60 Gene
Drugs & Compounds for NAA60 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| Coenzyme A | Investigational | Nutra | 0 |
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs | |
|---|---|---|---|---|---|---|
| acetyl-coa |
|
72-89-9 |
|
Transcripts for NAA60 Gene
mRNA/cDNA for NAA60 Gene
- (9) REFSEQ mRNAs :
- (15) Additional mRNA sequences :
- (318) Selected AceView cDNA sequences:
- (37) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for NAA60 Gene
CRISPR Products
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-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for NAA60
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miRNA Products
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Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for NAA60
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-
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Clone Products
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-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for available NAT15 gene related products
- orf clones - Search results for available NAT15 gene related products
- Applied Biological Materials Clones for NAA60
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | · | 2c | · | 2d | · | 2e | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | - | - | ||||||||||||||||||||
| SP2: | - | - | - | - | - | - | - | ||||||||||||||||||
| SP3: | |||||||||||||||||||||||||
| SP4: | |||||||||||||||||||||||||
| SP5: | - |
Expression for NAA60 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for NAA60 Gene
NURSA nuclear receptor signaling pathways regulating expression of NAA60 Gene:
NAA60SOURCE GeneReport for Unigene cluster for NAA60 Gene:
Hs.513296Evidence on tissue expression from TISSUES for NAA60 Gene
- Kidney(4.3)
- Nervous system(4.3)
Primer Products
-
OriGene qPCR primer pairs and template standards for NAA60
-
OriGene qPCR primer pairs for NAA60
- genomics-online: primer clones - Search results for available NAT15 gene related products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAA60 Gene
Orthologs for NAA60 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | -- 34 |
|
OneToMany | |
| dog (Canis familiaris) |
Mammalia | -- 34 |
|
OneToMany | |
| NAA60 33 |
|
||||
| mouse (Mus musculus) |
Mammalia | Naa60 33 16 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Naa60 33 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | -- 34 |
|
OneToMany | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 34 |
|
OneToMany | |
| cow (Bos Taurus) |
Mammalia | NAA60 33 34 |
|
||
| chicken (Gallus gallus) |
Aves | NAA60 33 |
|
||
| -- 34 |
|
OneToMany | |||
| lizard (Anolis carolinensis) |
Reptilia | -- 34 |
|
OneToMany | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | naa60 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | nat15 33 34 |
|
||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP005192 33 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | Naa60 33 34 |
|
||
| worm (Caenorhabditis elegans) |
Secernentea | F30F8.10 33 34 |
|
- Species where no ortholog for NAA60 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for NAA60 Gene
No data available for Paralogs for NAA60 Gene
Variants for NAA60 Gene
| SNP ID | Clin | Chr 16 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000001155 | -- | 3,474,158(+) | A/G | intron_variant | |
| rs1000007986 | -- | 3,448,237(+) | G/T | genic_upstream_transcript_variant, intron_variant | |
| rs1000055627 | -- | 3,443,745(+) | A/C | 5_prime_UTR_variant, genic_upstream_transcript_variant | |
| rs1000111807 | -- | 3,444,239(+) | G/T | genic_upstream_transcript_variant, intron_variant | |
| rs1000181126 | -- | 3,472,965(+) | C/T | intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv324e201 | CNV | deletion | 23290073 |
| dgv325e201 | CNV | deletion | 23290073 |
| esv2665923 | CNV | deletion | 23128226 |
| esv2750408 | CNV | deletion | 23290073 |
| esv2750409 | CNV | deletion | 23290073 |
| esv29492 | CNV | gain | 19812545 |
| esv3553026 | CNV | deletion | 23714750 |
| esv3637667 | CNV | gain | 21293372 |
| esv3637668 | CNV | loss | 21293372 |
| nsv1051957 | CNV | loss | 25217958 |
| nsv1070738 | CNV | deletion | 25765185 |
| nsv1148032 | CNV | deletion | 26484159 |
| nsv1715 | CNV | deletion | 18451855 |
| nsv512420 | CNV | loss | 21212237 |
| nsv952908 | CNV | deletion | 24416366 |
Residual Variation Intolerance Score:
53.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
2.15;
39.09% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for NAA60 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- NAA60
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NAA60 Gene
Disorders for NAA60 Gene
Additional Disease Information for NAA60
No disorders were found for NAA60 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAA60 Gene
Publications for NAA60 Gene
- An organellar nα-acetyltransferase, naa60, acetylates cytosolic N termini of transmembrane proteins and maintains Golgi integrity. (PMID: 25732826) Aksnes H … Arnesen T (Cell reports 2015) 2 3 4 58
- NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation. (PMID: 21750686) Van Damme P … Arnesen T (PLoS genetics 2011) 2 3 4 58
- Crystal Structure of the Golgi-Associated Human Nα-Acetyltransferase 60 Reveals the Molecular Determinants for Substrate-Specific Acetylation. (PMID: 27320834) Støve SI … Arnesen T (Structure (London, England : 1993) 2016) 3 4 58
- Structure and function of human Naa60 (NatF), a Golgi-localized bi-functional acetyltransferase. (PMID: 27550639) Chen JY … Yun CH (Scientific reports 2016) 3 4 58
- Methylation screening of reciprocal genome-wide UPDs identifies novel human-specific imprinted genes. (PMID: 21593219) Nakabayashi K … Monk D (Human molecular genetics 2011) 3 4 58
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- Mammalian expression: PiggyBac
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- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 29 available NAT15 Antibodies ranked by validation data
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- genomics-online: gRNA clones - Search results for available NAT15 gene related products
- genomics-online: primer clones - Search results for available NAT15 gene related products
- genomics-online: shRNA clones - Search results for available NAT15 gene related products
Sources for NAA60 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
