Aliases for MYRF-AS1 Gene

Subcategory (RNA class) for MYRF-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for MYRF-AS1 Gene

  • MYRF Antisense RNA 1 2 3
  • DKFZP434K028 3 5
  • Uncharacterized LOC26070 5
  • Lnc-TMEM258-3 170
  • NONHSAG008487 94
  • HSALNG0084552 169

External Ids for MYRF-AS1 Gene

Summaries for MYRF-AS1 Gene

GeneCards Summary for MYRF-AS1 Gene

MYRF-AS1 (MYRF Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MYRF-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MYRF-AS1 Gene

Genomics for MYRF-AS1 Gene

GeneHancer (GH) Regulatory Elements for MYRF-AS1 Gene

Promoters and enhancers for MYRF-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J061752 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 759.5 +1.6 1627 7.8 SP1 CTCF RBPJ SMARCE1 NR2F1 NR2F6 MIXL1 MYC NFYC HLF MYRF MYRF-AS1 CPSF7 CSKMT MTA2 TMEM138 TUT1 GANAB AHNAK TTC9C
GH11J061679 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 17.6 +75.7 75732 4.4 ZNF785 ZNF24 ZBTB40 CTCF SIX5 MLX RBPJ USF2 NR2F6 CREB1 DAGLA GANAB MYRF EML3 TMEM138 INTS5 MYRF-AS1 TMEM109 RN7SL23P EEF1G
GH11J061693 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 19.4 +59.7 59740 8.5 CTCF POLR2A USF2 ZNF217 MYC MAX MNT NCOA3 MAFK TFE3 MYRF MYRF-AS1 DAGLA SYT7 FTH1 CYB561A3 VWCE SDHAF2 DDB1 CPSF7
GH11J061916 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.7 -163.1 -163096 10.3 RBPJ SMARCE1 POLR2A NR2F6 RUNX1 CC2D1A L3MBTL2 DACH1 MNT TEAD4 RAB3IL1 GANAB NXF1 CPSF7 CSKMT TMEM179B TMEM138 INTS5 UBXN1 SNHG1
GH11J061798 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 11.7 -41.2 -41236 4.2 SIN3A ZBTB40 CTCF POLR2A SMARCE1 MIXL1 ZNF362 CC2D1A HLF L3MBTL2 FEN1 FADS2 FADS1 MYRF-AS1 BEST1 lnc-TMEM258-2-001
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MYRF-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MYRF-AS1 Gene

Genomic Locations for MYRF-AS1 Gene
chr11:61,746,493-61,757,664
(GRCh38/hg38)
Size:
11,172 bases
Orientation:
Minus strand
chr11:61,513,965-61,525,136
(GRCh37/hg19)
Size:
11,172 bases
Orientation:
Minus strand

Genomic View for MYRF-AS1 Gene

Genes around MYRF-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MYRF-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MYRF-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYRF-AS1 Gene

Proteins for MYRF-AS1 Gene

Post-translational modifications for MYRF-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MYRF-AS1 Gene

Domains & Families for MYRF-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MYRF-AS1 Gene

Function for MYRF-AS1 Gene

Phenotypes From GWAS Catalog for MYRF-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MYRF-AS1 Gene

Localization for MYRF-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MYRF-AS1 Gene

Pathways & Interactions for MYRF-AS1 Gene

PathCards logo

SuperPathways for MYRF-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MYRF-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MYRF-AS1 Gene

Drugs & Compounds for MYRF-AS1 Gene

No Compound Related Data Available

Transcripts for MYRF-AS1 Gene

mRNA/cDNA for MYRF-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNACentral transcripts :
(7) LNCipedia transcripts :
(6) NONCODE transcripts :
(2) LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MYRF-AS1 Gene

No ASD Table

Relevant External Links for MYRF-AS1 Gene

GeneLoc Exon Structure for
MYRF-AS1
ECgene alternative splicing isoforms for
MYRF-AS1

Expression for MYRF-AS1 Gene

SOURCE GeneReport for Unigene cluster for MYRF-AS1 Gene:

Hs.564254
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MYRF-AS1 Gene

Orthologs for MYRF-AS1 Gene

Evolution for MYRF-AS1 Gene

ENSEMBL:
Gene Tree for MYRF-AS1 (if available)
TreeFam:
Gene Tree for MYRF-AS1 (if available)

No data available for Orthologs for MYRF-AS1 Gene

Paralogs for MYRF-AS1 Gene

No data available for Paralogs for MYRF-AS1 Gene

Variants for MYRF-AS1 Gene

Sequence variations from dbSNP and Humsavar for MYRF-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000955626 -- 61,754,068(-) G/A non_coding_transcript_variant
rs1001207069 -- 61,759,586(-) C/T upstream_transcript_variant
rs1001968561 -- 61,759,218(-) A/G upstream_transcript_variant
rs1002303601 -- 61,754,931(-) C/G intron_variant
rs1002355991 -- 61,754,694(-) G/A/C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MYRF-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv528697 CNV loss 19592680
nsv832179 CNV loss 17160897
nsv952459 CNV deletion 24416366

Additional Variant Information for MYRF-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MYRF-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MYRF-AS1 Gene

Disorders for MYRF-AS1 Gene

No disorders were found for MYRF-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for MYRF-AS1 Gene

Publications for MYRF-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 56
  2. Protein interaction discovery using parallel analysis of translated ORFs (PLATO). (PMID: 23503679) Zhu J … Elledge SJ (Nature biotechnology 2013) 3 56
  3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 56
  4. Protein array based interactome analysis of amyloid-β indicates an inhibition of protein translation. (PMID: 21244100) Virok DP … Fülöp L (Journal of proteome research 2011) 3 56

No data available for External Links for MYRF-AS1 Gene

Products for MYRF-AS1 Gene

Sources for MYRF-AS1 Gene