Aliases for MYOCD-AS1 Gene

Subcategory (RNA class) for MYOCD-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MYOCD-AS1 Gene

  • MYOCD Antisense RNA 1 2 3
  • Novel Transcript, Antisense To MYOCD 5
  • NONHSAG020851 92
  • HSALNG0114630 167
  • Lnc-ELAC2-4 168
  • AC005358.1 5
  • MYOCD-AS1 2

External Ids for MYOCD-AS1 Gene

Summaries for MYOCD-AS1 Gene

GeneCards Summary for MYOCD-AS1 Gene

MYOCD-AS1 (MYOCD Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MYOCD-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MYOCD-AS1 Gene

Genomics for MYOCD-AS1 Gene

GeneHancer (GH) Regulatory Elements for MYOCD-AS1 Gene

Promoters and enhancers for MYOCD-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J012705 Enhancer 0.4 Ensembl dbSUPER 500.7 -0.1 -65 0.8 SOX13 MYOCD-AS1 NONHSAG020852.2 MYOCD
GH17J012744 Promoter/Enhancer 0.9 EPDnew Ensembl dbSUPER 12.1 -38.3 -38291 0.5 FOS ZNF239 CEBPB MYC STAT3 MYOCD MYOCD-AS1 ARHGAP44 RF00017-2287 NONHSAG020852.2
GH17J012741 Enhancer 1 Ensembl ENCODE dbSUPER 11.2 -36.3 -36251 1.2 CTCF REST RAD21 TRIM22 SMC3 TCF12 NFIC CBFB ZNF184 YY1 MYOCD-AS1 ARHGAP44 RF00017-2287 NONHSAG020852.2 MYOCD
GH17J012737 Enhancer 0.6 Ensembl dbSUPER 11.5 -31.8 -31764 0.6 EP300 TCF7L2 GATA3 CEBPB CEBPG MYOCD-AS1 RF00017-2287 NONHSAG020852.2 MYOCD
GH17J012743 Enhancer 0.4 ENCODE dbSUPER 11.2 -37.1 -37123 0.2 STAT3 MYOCD-AS1 ARHGAP44 RF00017-2287 NONHSAG020852.2 MYOCD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MYOCD-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MYOCD-AS1 Gene

Genomic Locations for MYOCD-AS1 Gene
chr17:12,671,862-12,706,136
(GRCh38/hg38)
Size:
34,275 bases
Orientation:
Minus strand
chr17:12,575,179-12,609,452
(GRCh37/hg19)
Size:
34,274 bases
Orientation:
Minus strand

Genomic View for MYOCD-AS1 Gene

Genes around MYOCD-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MYOCD-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MYOCD-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYOCD-AS1 Gene

Proteins for MYOCD-AS1 Gene

Post-translational modifications for MYOCD-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MYOCD-AS1 Gene

Domains & Families for MYOCD-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MYOCD-AS1 Gene

Function for MYOCD-AS1 Gene

Phenotypes From GWAS Catalog for MYOCD-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MYOCD-AS1 Gene

Localization for MYOCD-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MYOCD-AS1 Gene

Pathways & Interactions for MYOCD-AS1 Gene

PathCards logo

SuperPathways for MYOCD-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MYOCD-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MYOCD-AS1 Gene

Drugs & Compounds for MYOCD-AS1 Gene

No Compound Related Data Available

Transcripts for MYOCD-AS1 Gene

mRNA/cDNA for MYOCD-AS1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MYOCD-AS1 Gene

No ASD Table

Relevant External Links for MYOCD-AS1 Gene

GeneLoc Exon Structure for
MYOCD-AS1

Expression for MYOCD-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MYOCD-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MYOCD-AS1 Gene

Orthologs for MYOCD-AS1 Gene

Evolution for MYOCD-AS1 Gene

ENSEMBL:
Gene Tree for MYOCD-AS1 (if available)
TreeFam:
Gene Tree for MYOCD-AS1 (if available)

No data available for Orthologs for MYOCD-AS1 Gene

Paralogs for MYOCD-AS1 Gene

No data available for Paralogs for MYOCD-AS1 Gene

Variants for MYOCD-AS1 Gene

Additional dbSNP identifiers (rs#s) for MYOCD-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MYOCD-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2715663 CNV deletion 23290073
esv34095 CNV loss 18971310

Additional Variant Information for MYOCD-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MYOCD-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MYOCD-AS1 Gene

Disorders for MYOCD-AS1 Gene

No disorders were found for MYOCD-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for MYOCD-AS1 Gene

Publications for MYOCD-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for MYOCD-AS1 Gene

Products for MYOCD-AS1 Gene

Sources for MYOCD-AS1 Gene