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Aliases for MYLK-AS1 Gene

Subcategory (RNA class) for MYLK-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MYLK-AS1 Gene

  • MYLK Antisense RNA 1 2 3 5
  • MYLK Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MYLK-AS1 Gene

Previous GeneCards Identifiers for MYLK-AS1 Gene

  • GC03P123306

Summaries for MYLK-AS1 Gene

GeneCards Summary for MYLK-AS1 Gene

MYLK-AS1 (MYLK Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MYLK-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MYLK-AS1 Gene

Genomics for MYLK-AS1 Gene

GeneHancer (GH) Regulatory Elements for MYLK-AS1 Gene

Promoters and enhancers for MYLK-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I123581 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE 550.8 -0.3 -251 6.5 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 HACD2 MYLK-AS1 ADCY5 GC03P123375
GH03I123617 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 11.7 +34.5 34525 5.1 CLOCK FOXA2 NFIB NEUROD1 SIN3A RFX5 ZSCAN5C SCRT2 RCOR1 CEBPB MYLK HACD2 MYLK-AS1 GC03M123611 PIR59914
GH03I123652 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +68.0 68016 2.3 ELF3 PKNOX1 ZSCAN4 ARID4B DMAP1 ZNF48 RAD21 YY1 HSF1 ZNF143 MYLK MYLK-AS2 HACD2 MYLK-AS1 ROPN1 PIR59914
GH03I123631 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 11 +47.1 47126 1.9 USF1 FOXA2 SIN3A EP300 ZIC2 NR2F2 JUND POLR2A ATF3 ZBTB17 PIR59914 HACD2 MYLK-AS1 ADCY5 MYLK-AS2 MYLK
GH03I123633 Enhancer 1 Ensembl ENCODE dbSUPER 11 +49.1 49141 2.1 TFAP4 FOXA2 RXRA REST ZIC2 NR2F2 JUND ATF3 HNF4A HACD2 MYLK-AS1 PIR59914 MYLK-AS2 MYLK
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MYLK-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MYLK-AS1 Gene

Genomic Locations for MYLK-AS1 Gene
chr3:123,585,513-123,644,568
(GRCh38/hg38)
Size:
59,056 bases
Orientation:
Plus strand
chr3:123,304,389-123,363,415
(GRCh37/hg19)

Genomic View for MYLK-AS1 Gene

Genes around MYLK-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MYLK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MYLK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYLK-AS1 Gene

Proteins for MYLK-AS1 Gene

Post-translational modifications for MYLK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MYLK-AS1 Gene

Domains & Families for MYLK-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MYLK-AS1 Gene

Function for MYLK-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MYLK-AS1 Gene

Localization for MYLK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MYLK-AS1 Gene

Pathways & Interactions for MYLK-AS1 Gene

SuperPathways for MYLK-AS1 Gene

No Data Available

Interacting Proteins for MYLK-AS1 Gene

Gene Ontology (GO) - Biological Process for MYLK-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MYLK-AS1 Gene

Drugs & Compounds for MYLK-AS1 Gene

No Compound Related Data Available

Transcripts for MYLK-AS1 Gene

mRNA/cDNA for MYLK-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MYLK-AS1 Gene

MYLK antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MYLK-AS1 Gene

No ASD Table

Relevant External Links for MYLK-AS1 Gene

GeneLoc Exon Structure for
MYLK-AS1
ECgene alternative splicing isoforms for
MYLK-AS1

Expression for MYLK-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MYLK-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MYLK-AS1 Gene

This gene is overexpressed in Esophagus - Muscularis (x4.5), Artery - Tibial (x4.2), and Esophagus - Gastroesophageal Junction (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of MYLK-AS1 Gene:

MYLK-AS1

SOURCE GeneReport for Unigene cluster for MYLK-AS1 Gene:

Hs.556600
genes like me logo Genes that share expression patterns with MYLK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MYLK-AS1 Gene

Orthologs for MYLK-AS1 Gene

Evolution for MYLK-AS1 Gene

ENSEMBL:
Gene Tree for MYLK-AS1 (if available)
TreeFam:
Gene Tree for MYLK-AS1 (if available)

No data available for Orthologs for MYLK-AS1 Gene

Paralogs for MYLK-AS1 Gene

No data available for Paralogs for MYLK-AS1 Gene

Variants for MYLK-AS1 Gene

Sequence variations from dbSNP and Humsavar for MYLK-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1042398307 uncertain-significance, Thoracic aortic aneurysm and aortic dissection 123,612,475(+) C/T intron_variant
rs1060502530 uncertain-significance, Aortic aneurysm, familial thoracic 7 123,626,937(+) G/A intron_variant
rs112095273 likely-benign, Thoracic aortic aneurysm and aortic dissection 123,613,160(+) C/T intron_variant
rs113046889 uncertain-significance, Thoracic aortic aneurysm and aortic dissection 123,612,803(+) A/G intron_variant
rs11403360 likely-benign, Thoracic aortic aneurysm and aortic dissection 123,613,340(+) TTTTTTTTTT/TTTTTTTTTTT/TTTTTTTTTTTT intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MYLK-AS1 Gene

Variant ID Type Subtype PubMed ID
esv23420 CNV loss 19812545
esv2667985 CNV deletion 23128226
esv3597627 CNV loss 21293372
esv3597628 CNV loss 21293372
nsv829709 CNV loss 17160897
nsv829708 CNV gain 17160897
nsv591428 CNV gain 21841781
nsv460837 CNV gain 19166990

Additional Variant Information for MYLK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MYLK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MYLK-AS1 Gene

Disorders for MYLK-AS1 Gene

Additional Disease Information for MYLK-AS1

No disorders were found for MYLK-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MYLK-AS1 Gene

Publications for MYLK-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for MYLK-AS1 Gene

Sources for MYLK-AS1 Gene

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