Aliases for MUC5B-AS1 Gene

Subcategory (RNA class) for MUC5B-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for MUC5B-AS1 Gene

  • MUC5B Antisense RNA 1 2 3 5
  • MUC5B-AS1 2 5 165
  • NONHSAG007374.2 91
  • HSALNG0082084 164

External Ids for MUC5B-AS1 Gene

Summaries for MUC5B-AS1 Gene

GeneCards Summary for MUC5B-AS1 Gene

MUC5B-AS1 (MUC5B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MUC5B-AS1 include Lung Cancer Susceptibility 3.

Additional gene information for MUC5B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MUC5B-AS1 Gene

Genomics for MUC5B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MUC5B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J001249 Enhancer 0.2 dbSUPER 600.7 -0.2 -212 0.7 MUC5B-AS1 MN309316-004 NONHSAG007375.2 TOLLIP-AS1 MIR6744 MUC5B TOLLIP
GH11J001227 Enhancer 0.6 CraniofacialAtlas dbSUPER 13.3 +23.2 23205 0.2 CTCF EGR1 RAD21 MUC5B-AS1 MUC5B MN309316-001 TOLLIP
GH11J001274 Enhancer 0.3 dbSUPER 12.4 -28.1 -28067 5.6 RXRA POLR2A piR-57628 TOLLIP-AS1 TOLLIP MUC5B-AS1 MUC5B MOB2 BRSK2 piR-34155 LOC105376512
GH11J001226 Enhancer 0.2 dbSUPER 13.3 +24.1 24101 0.4 MUC5B-AS1 TOLLIP-AS1 MUC5B MN309316-001 TOLLIP
GH11J001229 Enhancer 0.2 dbSUPER 13.3 +21.1 21075 0.3 MUC5B-AS1 MUC5B MN309316-001 TOLLIP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MUC5B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MUC5B-AS1 Gene

Genomic Locations for MUC5B-AS1 Gene
chr11:1,242,261-1,249,676
(GRCh38/hg38)
Size:
7,416 bases
Orientation:
Minus strand
chr11:1,263,491-1,270,906
(GRCh37/hg19)
Size:
7,416 bases
Orientation:
Minus strand

Genomic View for MUC5B-AS1 Gene

Genes around MUC5B-AS1 on UCSC Golden Path with GeneCards custom track
MUC5B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MUC5B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MUC5B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MUC5B-AS1 Gene

Proteins for MUC5B-AS1 Gene

Post-translational modifications for MUC5B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MUC5B-AS1 Gene

Domains & Families for MUC5B-AS1 Gene

Gene Families for MUC5B-AS1 Gene

genes like me logo Genes that share domains with MUC5B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MUC5B-AS1 Gene

Function for MUC5B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MUC5B-AS1 Gene

Localization for MUC5B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MUC5B-AS1 Gene

Pathways & Interactions for MUC5B-AS1 Gene

PathCards logo

SuperPathways for MUC5B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MUC5B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MUC5B-AS1 Gene

Drugs & Compounds for MUC5B-AS1 Gene

No Compound Related Data Available

Transcripts for MUC5B-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MUC5B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000E9EFC_9606 lncRNA 434 6

HGNC: 53936,

RefSeq: NR_157183,

Ensembl: ENST00000532061 (view in UCSC) ,

LncBook: HSALNT0170966,

LNCipedia: MUC5B-AS1:4,

NONCODE: NONHSAT017387.2,

URS00008BA46F_9606 lncRNA 391 3

LncBook: HSALNT0170967,

LNCipedia: MUC5B-AS1:5,

NONCODE: NONHSAT017388.2,

MUC5B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MUC5B-AS1 Gene

No ASD Table

Relevant External Links for MUC5B-AS1 Gene

GeneLoc Exon Structure for
MUC5B-AS1

No data available for mRNA/cDNA for MUC5B-AS1 Gene

Expression for MUC5B-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MUC5B-AS1 Gene

Orthologs for MUC5B-AS1 Gene

Evolution for MUC5B-AS1 Gene

ENSEMBL:
Gene Tree for MUC5B-AS1 (if available)
TreeFam:
Gene Tree for MUC5B-AS1 (if available)

No data available for Orthologs for MUC5B-AS1 Gene

Paralogs for MUC5B-AS1 Gene

No data available for Paralogs for MUC5B-AS1 Gene

Variants for MUC5B-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MUC5B-AS1 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
rs1060499877 Uncertain Significance: not specified 1,244,542(-) GA/G FRAMESHIFT_VARIANT
rs11605113 Benign: not specified 1,243,132(-) A/G SYNONYMOUS_VARIANT
rs116870693 Likely Benign: not specified 1,245,890(-) G/A MISSENSE_VARIANT
rs117501397 Benign: not specified 1,246,473(-) G/C MISSENSE_VARIANT
rs117736426 Benign: not specified 1,244,709(-) C/G MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for MUC5B-AS1 Gene

Additional Variant Information for MUC5B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MUC5B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MUC5B-AS1 Gene

Disorders for MUC5B-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MUC5B-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
lung cancer susceptibility 3
  • lncr3
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with MUC5B-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MUC5B-AS1 Gene

Publications for MUC5B-AS1 Gene

  1. Long non-coding RNA MUC5B-AS1 promotes metastasis through mutually regulating MUC5B expression in lung adenocarcinoma. (PMID: 29670111) Yuan S … Li Y (Cell death & disease 2018) 2 3

Products for MUC5B-AS1 Gene

Sources for MUC5B-AS1 Gene