Aliases for MTOR-AS1 Gene

Data sources for MTOR-AS1 Gene:

RNA type for MTOR-AS1 Gene

lncRNA

Aliases for MTOR-AS1 Gene

External Ids for MTOR-AS1 Gene

Previous GeneCards Identifiers for MTOR-AS1 Gene

  • GC00U933341
  • GC01P011204

Summaries for MTOR-AS1 Gene

GeneCards Summary for MTOR-AS1 Gene

MTOR-AS1 (MTOR Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MTOR-AS1 include Smith-Kingsmore Syndrome.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MTOR-AS1 Gene

Genomics for MTOR-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MTOR-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J011143 Enhancer 0.5 Ensembl ENCODE 250.7 +0.9 897 2 GATA2 CHD2 MTOR-AS1 MTOR RF00026-006 RNU6-537P ANGPTL7 EXOSC10
GH01J011280 Enhancer 1 Ensembl ENCODE 9.7 +140.2 140197 8.6 ZNF654 POLR2A ZNF10 FEZF1 CTCF SIN3A MAFF RAD21 TAL1 ZNF316 MTOR ANGPTL7 MTOR-AS1 EXOSC10 MASP2 UBE2V2P3 lnc-MTOR-5 piR-40706 UBIAD1 DISP3
GH01J011062 Enhancer 0.8 ENCODE 10.7 -80.6 -80564 1.2 BCLAF1 ZNF600 BCL11A SIN3A TRIM22 IRF4 EBF1 CBFB MAX BHLHE40 TARDBP MTOR-AS1 MTOR ENSG00000226849 SRM lnc-TARDBP-5 EXOSC10
GH01J010765 Enhancer 0.9 Ensembl ENCODE dbSUPER 8.8 -377.4 -377392 2.6 BHLHE40 KLF9 RXRA ZNF189 HNF4A SP1 ZMYM3 KLF10 ZSCAN4 ZBTB33 MTOR-AS1 MTOR HSALNG0000801 RF00951-004 CASZ1 DFFA
GH01J010758 Enhancer 0.8 ENCODE dbSUPER 8.8 -382.8 -382849 4.5 SIN3A HNF4A SCRT1 ZNF48 RAD21 RFX1 SP1 NR2F6 ZNF384 ZNF687 MTOR-AS1 MTOR HSALNG0000801 RF00951-004 CASZ1 DFFA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MTOR-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MTOR-AS1 Gene

Latest Assembly
chr1:11,143,703-11,149,538
(GRCh38/hg38)
Size:
5,836 bases
Orientation:
Plus strand

Previous Assembly
chr1:11,203,955-11,209,595
(GRCh37/hg19 by Entrez Gene)
Size:
5,641 bases
Orientation:
Plus strand

chr1:11,203,955-11,209,594
(GRCh37/hg19 by Ensembl)
Size:
5,640 bases
Orientation:
Plus strand

Genomic View for MTOR-AS1 Gene

Genes around MTOR-AS1 on UCSC Golden Path with GeneCards custom track
MTOR-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MTOR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MTOR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MTOR-AS1 Gene

Proteins for MTOR-AS1 Gene

Post-translational modifications for MTOR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MTOR-AS1 Gene

Domains & Families for MTOR-AS1 Gene

Gene Families for MTOR-AS1 Gene

genes like me logo Genes that share domains with MTOR-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MTOR-AS1 Gene

Function for MTOR-AS1 Gene

Phenotypes From GWAS Catalog for MTOR-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MTOR-AS1 Gene

Localization for MTOR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MTOR-AS1 Gene

Pathways & Interactions for MTOR-AS1 Gene

PathCards logo

SuperPathways for MTOR-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MTOR-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MTOR-AS1 Gene

Drugs & Compounds for MTOR-AS1 Gene

No Compound Related Data Available

Transcripts for MTOR-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MTOR-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075B5BB_9606 lncRNA 706 3

RefSeq: NR_046600,

LncBook: HSALNT0001701,

NONCODE: NONHSAT000885.2,

URS000059B140_9606 lncRNA 673 3

Ensembl: ENST00000420480 (view in UCSC) ,

LncBook: HSALNT0001703,

NONCODE: NONHSAT000886.2,

URS00001F522B_9606 lncRNA 705 2

Ensembl: ENST00000445982 (view in UCSC) ,

LncBook: HSALNT0001700,

URS00009B540E_9606 lncRNA 818 1

NONCODE: NONHSAT148378.1,

URS0001BD9824_9606 lncRNA 706 1

LncBook: HSALNT0001701,

MTOR-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MTOR-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MTOR-AS1 Gene

No ASD Table

Relevant External Links for MTOR-AS1 Gene

GeneLoc Exon Structure for
MTOR-AS1

Expression for MTOR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MTOR-AS1 Gene

SOURCE GeneReport for Unigene cluster for MTOR-AS1 Gene:

Hs.679133
genes like me logo Genes that share expression patterns with MTOR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MTOR-AS1 Gene

Orthologs for MTOR-AS1 Gene

Evolution for MTOR-AS1 Gene

ENSEMBL:
Gene Tree for MTOR-AS1 (if available)
TreeFam:
Gene Tree for MTOR-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for MTOR-AS1

No data available for Orthologs for MTOR-AS1 Gene

Paralogs for MTOR-AS1 Gene

No data available for Paralogs for MTOR-AS1 Gene

Variants for MTOR-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MTOR-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
833723 Likely Benign: not provided 11,145,048(+) A/G
NM_004958.4(MTOR):c.4687-3T>C
INTRON
833739 Likely Benign: not provided 11,146,771(+) C/G
NM_004958.4(MTOR):c.4591G>C (p.Glu1531Gln)
MISSENSE
851388 Uncertain Significance: not provided 11,146,765(+) T/C
NM_004958.4(MTOR):c.4597A>G (p.Thr1533Ala)
MISSENSE
856486 Benign: not provided 11,146,739(+) A/T
NM_004958.4(MTOR):c.4623T>A (p.His1541Gln)
MISSENSE
860449 Uncertain Significance: not provided 11,144,658(+) T/C
NM_004958.4(MTOR):c.4862A>G (p.Glu1621Gly)
MISSENSE

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MTOR-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MTOR-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1122297 CNV deletion 24896259
nsv545407 CNV gain 21841781

Additional Variant Information for MTOR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MTOR-AS1
Leiden Open Variation Database (LOVD)
MTOR-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MTOR-AS1 Gene

Disorders for MTOR-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MTOR-AS1 Gene - From: CVR and GCD

Disorder Aliases PubMed IDs
smith-kingsmore syndrome
  • sks
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MTOR-AS1

genes like me logo Genes that share disorders with MTOR-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MTOR-AS1 Gene

Publications for MTOR-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for MTOR-AS1 Gene

Sources for MTOR-AS1 Gene