Aliases for MTOR-AS1 Gene

Subcategory (RNA class) for MTOR-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for MTOR-AS1 Gene

  • MTOR Antisense RNA 1 2 3 5
  • MTOR Antisense RNA 1 (Non-Protein Coding) 2 3
  • HSALNG0000847 169
  • NONHSAG000361 94
  • MTOR-AS1 2

External Ids for MTOR-AS1 Gene

Previous GeneCards Identifiers for MTOR-AS1 Gene

  • GC00U933341
  • GC01P011204

Summaries for MTOR-AS1 Gene

GeneCards Summary for MTOR-AS1 Gene

MTOR-AS1 (MTOR Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MTOR-AS1 include Smith-Kingsmore Syndrome.

Additional gene information for MTOR-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MTOR-AS1 Gene

Genomics for MTOR-AS1 Gene

GeneHancer (GH) Regulatory Elements for MTOR-AS1 Gene

Promoters and enhancers for MTOR-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J011144 Enhancer 0.4 Ensembl ENCODE 750.6 +1.1 1098 1.6 RCOR1 MTOR-AS1 MTOR RF00026-006 RNU6-537P
GH01J010755 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 8.8 -384.9 -384920 8.6 MAX SP5 ZNF384 KLF14 GLIS2 ZBTB33 RFX1 SP1 ZNF692 SP2 MTOR-AS1 MTOR CASZ1 RF00951-004 RF00017-060
GH01J011280 Enhancer 0.9 Ensembl ENCODE 9.7 +140.2 140197 8.6 ZBTB40 CTCF SMARCE1 POLR2A ETV6 HLF RAD21 SP1 MAFK ZSCAN21 MTOR ANGPTL7 MTOR-AS1 EXOSC10 MASP2 UBE2V2P3 lnc-MTOR-5 piR-40706 UBIAD1
GH01J011062 Enhancer 0.8 ENCODE 10.7 -80.6 -80564 1.2 ZNF24 ETV6 RELA MAX ZNF121 MLLT1 ZSCAN21 ZNF687 PRDM1 CREM TARDBP MTOR-AS1 MTOR lnc-TARDBP-5 ENSG00000226849
GH01J010765 Enhancer 0.9 Ensembl ENCODE dbSUPER 8.8 -377.4 -377392 2.6 SP1 ZBTB33 ZSCAN4 BCOR HNF4A BHLHE40 RXRA ZMYM3 MTOR-AS1 MTOR RF00951-004 RF00017-060 CASZ1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MTOR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MTOR-AS1 Gene

Genomic Locations for MTOR-AS1 Gene
chr1:11,143,703-11,149,538
(GRCh38/hg38)
Size:
5,836 bases
Orientation:
Plus strand
chr1:11,203,955-11,209,594
(GRCh37/hg19)
Size:
5,640 bases
Orientation:
Plus strand

Genomic View for MTOR-AS1 Gene

Genes around MTOR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MTOR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MTOR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MTOR-AS1 Gene

Proteins for MTOR-AS1 Gene

Post-translational modifications for MTOR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MTOR-AS1 Gene

Domains & Families for MTOR-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MTOR-AS1 Gene

Function for MTOR-AS1 Gene

Phenotypes From GWAS Catalog for MTOR-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MTOR-AS1 Gene

Localization for MTOR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MTOR-AS1 Gene

Pathways & Interactions for MTOR-AS1 Gene

PathCards logo

SuperPathways for MTOR-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MTOR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MTOR-AS1 Gene

Drugs & Compounds for MTOR-AS1 Gene

No Compound Related Data Available

Transcripts for MTOR-AS1 Gene

mRNA/cDNA for MTOR-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(3) NONCODE transcripts :
(3) LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MTOR-AS1 Gene

No ASD Table

Relevant External Links for MTOR-AS1 Gene

GeneLoc Exon Structure for
MTOR-AS1
ECgene alternative splicing isoforms for
MTOR-AS1

Expression for MTOR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MTOR-AS1 Gene

SOURCE GeneReport for Unigene cluster for MTOR-AS1 Gene:

Hs.679133
genes like me logo Genes that share expression patterns with MTOR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MTOR-AS1 Gene

Orthologs for MTOR-AS1 Gene

Evolution for MTOR-AS1 Gene

ENSEMBL:
Gene Tree for MTOR-AS1 (if available)
TreeFam:
Gene Tree for MTOR-AS1 (if available)

No data available for Orthologs for MTOR-AS1 Gene

Paralogs for MTOR-AS1 Gene

No data available for Paralogs for MTOR-AS1 Gene

Variants for MTOR-AS1 Gene

Sequence variations from dbSNP and Humsavar for MTOR-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs869312671 pathogenic, Smith-Kingsmore syndrome 11,144,735(+) C/T non_coding_transcript_variant
rs886041096 uncertain-significance, Smith-Kingsmore syndrome 11,146,756(+) T/C intron_variant
rs1057079 benign, not specified 11,145,001(+) C/T intron_variant
rs1000991364 -- 11,144,866(+) C/T non_coding_transcript_variant
rs1001062962 -- 11,142,665(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MTOR-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1122297 CNV deletion 24896259
nsv545407 CNV gain 21841781

Additional Variant Information for MTOR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MTOR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MTOR-AS1 Gene

Disorders for MTOR-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MTOR-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
smith-kingsmore syndrome
  • sks
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MTOR-AS1

genes like me logo Genes that share disorders with MTOR-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MTOR-AS1 Gene

Publications for MTOR-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 56

Products for MTOR-AS1 Gene

Sources for MTOR-AS1 Gene