MTA2 Gene (Protein Coding)

Metastasis Associated 1 Family Member 2

GC11M066686
GIFtS:
40
This gene encodes a protein that has been identified as a component of NuRD, a nucleosome remodeling deacetylase complex identified in the nucleus of human cells. It shows a very broad expression pattern and is strongly expressed in many tissues. It may represent one member of a small gene family that encode different but related proteins involved either directly or indirectly ... See more...

Aliases for MTA2 Gene

Aliases for MTA2 Gene

  • Metastasis Associated 1 Family Member 2 2 3 5
  • Metastasis Associated Gene Family, Member 2 2 3
  • P53 Target Protein In Deacetylase Complex 3 4
  • Metastasis-Associated Protein MTA2 3 4
  • Metastasis-Associated 1-Like 1 3 4
  • MTA1-L1 Protein 3 4
  • MTA1L1 3 4
  • PID 3 4
  • Metastasis -Associated Gene 1-Like 1 3
  • Metastasis-Associated Protein 2 3
  • MTA1-L1 2
  • MTA2 5

External Ids for MTA2 Gene

Previous HGNC Symbols for MTA2 Gene

  • MTA1L1

Previous GeneCards Identifiers for MTA2 Gene

  • GC11M062136
  • GC11M062119
  • GC11M062360
  • GC11M058689
  • GC11M062594
  • GC11M063416
  • GC11M063878

Summaries for MTA2 Gene

Entrez Gene Summary for MTA2 Gene

  • This gene encodes a protein that has been identified as a component of NuRD, a nucleosome remodeling deacetylase complex identified in the nucleus of human cells. It shows a very broad expression pattern and is strongly expressed in many tissues. It may represent one member of a small gene family that encode different but related proteins involved either directly or indirectly in transcriptional regulation. Their indirect effects on transcriptional regulation may include chromatin remodeling. It is closely related to another member of this family, a protein that has been correlated with the metastatic potential of certain carcinomas. These two proteins are so closely related that they share the same types of domains. These domains include two DNA binding domains, a dimerization domain, and a domain commonly found in proteins that methylate DNA. One of the proteins known to be a target protein for this gene product is p53. Deacetylation of p53 is correlated with a loss of growth inhibition in transformed cells supporting a connection between these gene family members and metastasis. [provided by RefSeq, May 2011]

GeneCards Summary for MTA2 Gene

MTA2 (Metastasis Associated 1 Family Member 2) is a Protein Coding gene. Diseases associated with MTA2 include Prostate Transitional Cell Carcinoma. Among its related pathways are Chromatin organization and Signaling events mediated by HDAC Class I. Gene Ontology (GO) annotations related to this gene include DNA-binding transcription factor activity and chromatin binding. An important paralog of this gene is MTA1.

UniProtKB/Swiss-Prot Summary for MTA2 Gene

  • May be involved in the regulation of gene expression as repressor and activator. The repression might be related to covalent modification of histone proteins.

Gene Wiki entry for MTA2 Gene

Additional gene information for MTA2 Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MTA2 Gene

Genomics for MTA2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MTA2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MTA2 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for MTA2

Top Transcription factor binding sites by QIAGEN in the MTA2 gene promoter:
  • CREB
  • CUTL1
  • deltaCREB
  • p53
  • Sp1
  • YY1

Genomic Locations for MTA2 Gene

Latest Assembly
chr11:62,593,214-62,601,865
(GRCh38/hg38)
Size:
8,652 bases
Orientation:
Minus strand

Previous Assembly
chr11:62,360,686-62,369,337
(GRCh37/hg19 by Entrez Gene)
Size:
8,652 bases
Orientation:
Minus strand

chr11:62,360,686-62,369,312
(GRCh37/hg19 by Ensembl)
Size:
8,627 bases
Orientation:
Minus strand

Genomic View for MTA2 Gene

Genes around MTA2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MTA2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MTA2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MTA2 Gene

Proteins for MTA2 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

  • Protein details for MTA2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O94776-MTA2_HUMAN
    Recommended name:
    Metastasis-associated protein MTA2
    Protein Accession:
    O94776
    Secondary Accessions:
    • Q68DB1
    • Q9UQB5

    Protein attributes for MTA2 Gene

    Size:
    668 amino acids
    Molecular mass:
    75023 Da
    Quaternary structure:
    • Component of the nucleosome-remodeling and histone-deacetylase multiprotein complex (NuRD) (By similarity). Interacts with HDAC7 and MBD3 (By similarity). Interacts with p53/TP53 (PubMed:11099047). Interacts with MINT (PubMed:11331609). Interacts with PIMREG (PubMed:18757745). Interacts with NACC2 (PubMed:22926524). Interacts with ERCC6 (PubMed:26030138).
    SequenceCaution:
    • Sequence=AAH23656.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

    Alternative splice isoforms for MTA2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MTA2 Gene

Protein Expression for MTA2 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for MTA2 Gene

  • Ubiquitination at Lys152, Lys508, Lys522, and Lys611
  • Modification sites at PhosphoSitePlus

Other Protein References for MTA2 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibodies for research

  • Abcam antibodies for MTA2
  • Santa Cruz Biotechnology (SCBT) Antibodies for MTA2

No data available for DME Specific Peptides for MTA2 Gene

Domains & Families for MTA2 Gene

Gene Families for MTA2 Gene

HGNC:
Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for MTA2 Gene

InterPro:
Blocks:
  • Bromo adjacent region
  • Zn-finger, GATA type
  • ELM2 domain

Suggested Antigen Peptide Sequences for MTA2 Gene

GenScript: Design optimal peptide antigens:
  • p53 target protein in deacetylase complex (MTA2_HUMAN)
genes like me logo Genes that share domains with MTA2: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MTA2 Gene

Function for MTA2 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Molecular function for MTA2 Gene

UniProtKB/Swiss-Prot Function:
May be involved in the regulation of gene expression as repressor and activator. The repression might be related to covalent modification of histone proteins.

Phenotypes From GWAS Catalog for MTA2 Gene

Gene Ontology (GO) - Molecular Function for MTA2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001085 RNA polymerase II transcription factor binding IPI 15920471
GO:0001103 RNA polymerase II repressing transcription factor binding IBA,IPI 22926524
GO:0003677 DNA binding IEA --
GO:0003682 chromatin binding IEA --
GO:0003712 transcription coregulator activity IEA --
genes like me logo Genes that share ontologies with MTA2: view
genes like me logo Genes that share phenotypes with MTA2: view

Animal Models for MTA2 Gene

MGI Knock Outs for MTA2:
  • Mta2 Mta2<tm1.1Yzha>
  • Mta2 Mta2<tm1a(EUCOMM)Wtsi>

Animal Models for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for MTA2

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for MTA2 Gene

Localization for MTA2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MTA2 Gene

Nucleus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MTA2 gene
Compartment Confidence
nucleus 5
cytosol 2
plasma membrane 1
extracellular 1
cytoskeleton 1
mitochondrion 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleoplasm (4)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for MTA2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000118 histone deacetylase complex TAS 10444591
GO:0000785 chromatin HDA 16217013
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm TAS --
GO:0005667 transcription factor complex IDA 15920471
genes like me logo Genes that share ontologies with MTA2: view

Pathways & Interactions for MTA2 Gene

genes like me logo Genes that share pathways with MTA2: view

Pathways by source for MTA2 Gene

1 BioSystems pathway for MTA2 Gene
2 GeneGo (Thomson Reuters) pathways for MTA2 Gene
  • Transcription Sin3 and NuRD in transcription regulation
  • Transcription_P53 signaling pathway

SIGNOR curated interactions for MTA2 Gene

Inactivates:
Is inactivated by:

Gene Ontology (GO) - Biological Process for MTA2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription by RNA polymerase II IBA 21873635
GO:0006306 DNA methylation IEA --
GO:0006333 chromatin assembly or disassembly TAS 10444591
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0010762 regulation of fibroblast migration IEA --
genes like me logo Genes that share ontologies with MTA2: view

Drugs & Compounds for MTA2 Gene

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  1. Drug products for research

(1) Drugs for MTA2 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with MTA2: view

Transcripts for MTA2 Gene

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  2. miRNA products for research
  3. Inhibitory RNAs for research
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mRNA/cDNA for MTA2 Gene

2 REFSEQ mRNAs :
12 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for MTA2

Alternative Splicing Database (ASD) splice patterns (SP) for MTA2 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19 ^
SP1:
SP2:
SP3: - - -
SP4: - -
SP5: -
SP6:
SP7:
SP8:
SP9:

ExUns: 20a · 20b ^ 21
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:

Relevant External Links for MTA2 Gene

GeneLoc Exon Structure for
MTA2

Expression for MTA2 Gene

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  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MTA2 Gene

mRNA expression in normal human tissues for MTA2 Gene
mRNA expression by BioGPS for MTA2 GenemRNA expression by GTEx for MTA2 Gene

Protein differential expression in normal tissues from HIPED for MTA2 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (18.1), Breast (8.6), and Lymph node (8.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for MTA2 Gene



Protein tissue co-expression partners for MTA2 Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MTA2

SOURCE GeneReport for Unigene cluster for MTA2 Gene:

Hs.173043

mRNA Expression by UniProt/SwissProt for MTA2 Gene:

O94776-MTA2_HUMAN
Tissue specificity: Widely expressed.

Evidence on tissue expression from TISSUES for MTA2 Gene

  • Nervous system(4.5)
  • Liver(4.4)
  • Eye(4.2)
  • Skin(2.6)
  • Lymph node(2.6)
  • Kidney(2.5)
  • Intestine(2.4)
  • Pancreas(2.3)
  • Lung(2.3)
  • Bone marrow(2.1)
  • Blood(2)
  • Stomach(2)
genes like me logo Genes that share expression patterns with MTA2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for MTA2 Gene

Orthologs for MTA2 Gene

This gene was present in the common ancestor of animals.

Orthologs for MTA2 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia MTA2 30
  • 100 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia MTA2 30
  • 98 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia MTA2 29 30
  • 93.11 (n)
 OneToOne
Cow
(Bos Taurus)
 Mammalia MTA2 29 30
  • 93.04 (n)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Mta2 29 16 30
  • 91.17 (n)
 OneToOne
Rat
(Rattus norvegicus)
 Mammalia Mta2 29
  • 90.52 (n)
Platypus
(Ornithorhynchus anatinus)
 Mammalia MTA2 30
  • 89 (a)
 OneToOne
Lizard
(Anolis carolinensis)
 Reptilia MTA2 30
  • 81 (a)
 OneToOne
Tropical Clawed Frog
(Silurana tropicalis)
 Amphibia mta2 29
  • 75.45 (n)
Str.6927 29
African clawed frog
(Xenopus laevis)
 Amphibia Xl.545 29
Zebrafish
(Danio rerio)
 Actinopterygii mta2 29 30
  • 71.96 (n)
 OneToOne
wufi29g02 29
Fruit Fly
(Drosophila melanogaster)
 Insecta MTA1-like 30
  • 38 (a)
 OneToOne
Worm
(Caenorhabditis elegans)
 Secernentea lin-40 30
  • 23 (a)
 OneToOne
Sea Squirt
(Ciona savignyi)
 Ascidiacea -- 30
  • 54 (a)
 OneToOne
Species where no ortholog for MTA2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)

Evolution for MTA2 Gene

ENSEMBL:
Gene Tree for MTA2 (if available)
TreeFam:
Gene Tree for MTA2 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for MTA2: view image
Alliance of Genome Resources:
Additional Orthologs for MTA2

Paralogs for MTA2 Gene

Paralogs for MTA2 Gene

(4) SIMAP similar genes for MTA2 Gene using alignment to 1 proteins:

  • MTA2_HUMAN
genes like me logo Genes that share paralogs with MTA2: view

Variants for MTA2 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MTA2 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MTA2 Gene

Variant ID Type Subtype PubMed ID
esv3579735 CNV loss 25503493
esv3584599 CNV gain 24956385
nsv514630 CNV gain 21397061
nsv555174 CNV gain 21841781
nsv825939 CNV gain 20364138
nsv832180 CNV loss 17160897
nsv832182 CNV gain+loss 17160897

Variation tolerance for MTA2 Gene

Residual Variation Intolerance Score: 3.46% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.63; 13.44% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for MTA2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MTA2
Leiden Open Variation Database (LOVD)
MTA2

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MTA2 Gene

Disorders for MTA2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MTA2 Gene - From: COP

Disorder Aliases PubMed IDs
prostate transitional cell carcinoma
  • transitional cell carcinoma of prostate
- elite association - COSMIC cancer census association via MalaCards
Search MTA2 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for MTA2

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with MTA2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MTA2 Gene

Publications for MTA2 Gene

  1. Molecular cloning, mapping, and characterization of a novel human gene, MTA1-L1, showing homology to a metastasis-associated gene, MTA1. (PMID: 9929979) Futamura M … Tokino T (Journal of human genetics 1999) 2 3 4 22
  2. Identification of Novel Proteins Co-Purifying with Cockayne Syndrome Group B (CSB) Reveals Potential Roles for CSB in RNA Metabolism and Chromatin Dynamics. (PMID: 26030138) Nicolai S … Proietti-De-Santis L (PloS one 2015) 3 4
  3. RBB, a novel transcription repressor, represses the transcription of HDM2 oncogene. (PMID: 22926524) Xuan C … Shang Y (Oncogene 2013) 3 4
  4. Overexpression of metastasis-associated protein 2 is associated with hepatocellular carcinoma size and differentiation. (PMID: 19702911) Lee H … Kim KW (Journal of gastroenterology and hepatology 2009) 3 22
  5. Members of the NuRD chromatin remodeling complex interact with AUF1 in developing cortical neurons. (PMID: 18413351) Lee C … Agoston DV (Cerebral cortex (New York, N.Y. : 1991) 2008) 3 22

ExternalLinks

View latest publications for MTA2 gene in Mastermind

Products for MTA2 Gene