Aliases for MSX2P1 Gene

Aliases for MSX2P1 Gene

  • Msh Homeobox 2 Pseudogene 1 2 3 5
  • Msh Homeobox Homolog 2 Pseudogene 3
  • Msh Homeobox 2 Pseudogene 2
  • HSHPX5 3
  • MSX2P 3
  • HPX5 3

External Ids for MSX2P1 Gene

Previous HGNC Symbols for MSX2P1 Gene

  • MSX2P

Previous GeneCards Identifiers for MSX2P1 Gene

  • GC17P053592
  • GC17P056235
  • GC17P056236
  • GC17P056239
  • GC17P056245
  • GC17P056252

Summaries for MSX2P1 Gene

GeneCards Summary for MSX2P1 Gene

MSX2P1 (Msh Homeobox 2 Pseudogene 1) is a Pseudogene.

Additional gene information for MSX2P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MSX2P1 Gene

Genomics for MSX2P1 Gene

GeneHancer (GH) Regulatory Elements for MSX2P1 Gene

Promoters and enhancers for MSX2P1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J058156 Promoter/Enhancer 1.2 Ensembl ENCODE 756.4 +0.4 356 1.4 ZNF785 USF2 SP7 ZSCAN21 ZNF547 GLIS2 ZIC2 ZBTB8A PRDM10 ZNF639 MSX2P1 MKS1 OR4D1 OR4D2
GH17J057660 Promoter/Enhancer 1.7 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 9.8 -492.8 -492839 7.5 ZBTB6 NFYC L3MBTL2 SP1 CSDE1 FOSL2 IKZF1 PKNOX1 POLR2A RFX1 COIL OR4D1 MSX2P1 MSI2 DYNLL2 lnc-DYNLL2-4 RF00066-085 RNU7-134P
GH17J057832 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -323.7 -323727 2.2 SIN3A CTCF MIXL1 CC2D1A RAD21 ELF3 NCOA3 SP7 MYC HDGF ENSG00000265542 lnc-MSI2-5 SRSF1 MKS1 COIL ENSG00000262298 CCDC182 DYNLL2 AKAP1 CUEDC1
GH17J058374 Enhancer 1.4 Ensembl ENCODE dbSUPER 9.4 +223.2 223232 10.8 FOXA1 LCORL MLX RBPJ NR2F1 ATF1 NR2F6 CREB1 MIXL1 CC2D1A TRIM37 RAD51C RNF43 SRSF1 SUPT4H1 MKS1 HSF5 LPO EPX MSX2P1
GH17J058184 Enhancer 1 Ensembl ENCODE 11.5 +28.3 28342 2.6 SMARCE1 ZNF133 MYC L3MBTL2 RBM39 MAX ZKSCAN8 ZFX SMARCA4 ZNF639 MKS1 SRSF1 MSX2P1 OR4D1 LPO ENSG00000264112 SUPT4H1 TSPOAP1 EPX OR4D2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MSX2P1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MSX2P1 gene promoter:
  • AhR
  • Arnt
  • GATA-1
  • HEN1
  • p53
  • POU2F1
  • POU2F1a
  • Spz1
  • STAT5B

Genomic Locations for MSX2P1 Gene

Genomic Locations for MSX2P1 Gene
2,162 bases
Plus strand
2,162 bases
Plus strand

Genomic View for MSX2P1 Gene

Genes around MSX2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSX2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSX2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSX2P1 Gene

Proteins for MSX2P1 Gene

Post-translational modifications for MSX2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MSX2P1 Gene

Domains & Families for MSX2P1 Gene

Gene Families for MSX2P1 Gene

genes like me logo Genes that share domains with MSX2P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MSX2P1 Gene

Function for MSX2P1 Gene

Phenotypes From GWAS Catalog for MSX2P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MSX2P1 Gene

Localization for MSX2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MSX2P1 Gene

Pathways & Interactions for MSX2P1 Gene

PathCards logo

SuperPathways for MSX2P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MSX2P1 Gene


No data available for Pathways by source and SIGNOR curated interactions for MSX2P1 Gene

Drugs & Compounds for MSX2P1 Gene

No Compound Related Data Available

Transcripts for MSX2P1 Gene

mRNA/cDNA for MSX2P1 Gene

(1) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MSX2P1 Gene

No ASD Table

Relevant External Links for MSX2P1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MSX2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MSX2P1 Gene

mRNA differential expression in normal tissues according to GTEx for MSX2P1 Gene

This gene is overexpressed in Whole Blood (x14.6), Spleen (x8.0), and Testis (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of MSX2P1 Gene:


SOURCE GeneReport for Unigene cluster for MSX2P1 Gene:

genes like me logo Genes that share expression patterns with MSX2P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MSX2P1 Gene

Orthologs for MSX2P1 Gene

Evolution for MSX2P1 Gene

Gene Tree for MSX2P1 (if available)
Gene Tree for MSX2P1 (if available)

No data available for Orthologs for MSX2P1 Gene

Paralogs for MSX2P1 Gene

No data available for Paralogs for MSX2P1 Gene

Variants for MSX2P1 Gene

Sequence variations from dbSNP and Humsavar for MSX2P1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000652187 -- 58,157,020(+) T/C non_coding_transcript_variant
rs1000794425 -- 58,158,786(+) T/G non_coding_transcript_variant
rs1000915551 -- 58,157,236(+) C/T non_coding_transcript_variant
rs1001055668 -- 58,158,557(+) G/A non_coding_transcript_variant
rs1001564022 -- 58,156,254(+) C/T upstream_transcript_variant

Additional Variant Information for MSX2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MSX2P1 Gene

Disorders for MSX2P1 Gene

Additional Disease Information for MSX2P1

No disorders were found for MSX2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSX2P1 Gene

Publications for MSX2P1 Gene

  1. Identification of homeobox genes expressed in human haemopoietic progenitor cells. (PMID: 7518789) Moretti P … D'Andrea R (Gene 1994) 2 3 56
  2. Comprehensive comparative homeobox gene annotation in human and mouse. (PMID: 26412852) Wilming LG … Harrow JL (Database : the journal of biological databases and curation 2015) 3 56

Products for MSX2P1 Gene

Sources for MSX2P1 Gene