MSX2P1 Gene (Pseudogene)

Msh Homeobox 2 Pseudogene 1

GC17P058157
GIFtS:
10
See more...

Aliases for MSX2P1 Gene

Aliases for MSX2P1 Gene

  • Msh Homeobox 2 Pseudogene 1 2 3 5
  • HSHPX5 2 3
  • HPX5 2 3
  • Msh Homeobox Homolog 2 Pseudogene 3
  • Msh Homeobox 2 Pseudogene 2
  • MSX2P1 5
  • MSX2P 3

External Ids for MSX2P1 Gene

Previous HGNC Symbols for MSX2P1 Gene

  • MSX2P

Previous GeneCards Identifiers for MSX2P1 Gene

  • GC17P053592
  • GC17P056235
  • GC17P056236
  • GC17P056239
  • GC17P056245
  • GC17P056252

Summaries for MSX2P1 Gene

GeneCards Summary for MSX2P1 Gene

MSX2P1 (Msh Homeobox 2 Pseudogene 1) is a Pseudogene.

Additional gene information for MSX2P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MSX2P1 Gene

Genomics for MSX2P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MSX2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J058156 Promoter/Enhancer 1.2 Ensembl ENCODE 606.5 +0.4 356 1.4 PRDM10 ZNF629 ZNF692 ZIC2 ZSCAN4 PATZ1 ZNF501 EZH2 ZNF600 ZNF561 MSX2P1 SRSF1 MKS1 OR4D1 OR4D2
GH17J057660 Promoter/Enhancer 1.7 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 9.7 -492.8 -492839 7.5 ZBTB33 RFX1 IKZF1 JUND DDX20 PKNOX1 POLR2A SP1 ZNF600 KLF9 OR4D1 MSX2P1 MSI2 DYNLL2 lnc-DYNLL2-4 RF00066-085 RNU7-134P CCDC182
GH17J057832 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -323.7 -323727 2.2 CREB1 GATAD2A CTCF TARDBP FOXA1 ZNF143 ZIC2 RXRB REST RAD21 lnc-MSI2-5 CCDC182 DYNLL2 AKAP1 SRSF1 CUEDC1 OR4D1 MSX2P1 ENSG00000265542 piR-32861-031
GH17J058374 Enhancer 1.4 Ensembl ENCODE dbSUPER 9.4 +223.2 223232 10.8 CREB1 GATAD2A ZBTB33 TEAD4 REST TFE3 LEF1 SOX13 IKZF1 NFKBIZ TRIM37 RAD51C RNF43 SRSF1 MKS1 SUPT4H1 HSF5 LPO EPX MSX2P1
GH17J058184 Enhancer 1 Ensembl ENCODE 11.5 +28.3 28342 2.6 LEF1 IKZF1 JUND REST HDAC1 ZNF600 SOX6 ZFX EP300 SCRT2 MKS1 SRSF1 MSX2P1 OR4D1 LPO SUPT4H1 TSPOAP1 EPX OR4D2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MSX2P1 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the MSX2P1 gene promoter:
  • AhR
  • Arnt
  • GATA-1
  • HEN1
  • p53
  • POU2F1
  • POU2F1a
  • Spz1
  • STAT5B

Genomic Locations for MSX2P1 Gene

Genomic Locations for MSX2P1 Gene
chr17:58,156,959-58,159,120
(GRCh38/hg38)
Size:
2,162 bases
Orientation:
Plus strand
chr17:56,234,320-56,236,481
(GRCh37/hg19)
Size:
2,162 bases
Orientation:
Plus strand

Genomic View for MSX2P1 Gene

Genes around MSX2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSX2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSX2P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MSX2P1 Gene

Proteins for MSX2P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MSX2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MSX2P1 Gene

Domains & Families for MSX2P1 Gene

Gene Families for MSX2P1 Gene

HGNC:
genes like me logo Genes that share domains with MSX2P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MSX2P1 Gene

Function for MSX2P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for MSX2P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MSX2P1 Gene

Localization for MSX2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MSX2P1 Gene

Pathways & Interactions for MSX2P1 Gene

PathCards logo

SuperPathways for MSX2P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MSX2P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MSX2P1 Gene

Drugs & Compounds for MSX2P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MSX2P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MSX2P1 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MSX2P1 Gene

No ASD Table

Relevant External Links for MSX2P1 Gene

GeneLoc Exon Structure for
MSX2P1

Expression for MSX2P1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MSX2P1 Gene

mRNA expression in normal human tissues for MSX2P1 Gene
mRNA expression by GTEx for MSX2P1 Gene

mRNA differential expression in normal tissues according to GTEx for MSX2P1 Gene

This gene is overexpressed in Whole Blood (x14.6), Spleen (x8.0), and Testis (x4.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MSX2P1

SOURCE GeneReport for Unigene cluster for MSX2P1 Gene:

Hs.381329
genes like me logo Genes that share expression patterns with MSX2P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MSX2P1 Gene

Orthologs for MSX2P1 Gene

Evolution for MSX2P1 Gene

ENSEMBL:
Gene Tree for MSX2P1 (if available)
TreeFam:
Gene Tree for MSX2P1 (if available)

No data available for Orthologs for MSX2P1 Gene

Paralogs for MSX2P1 Gene

No data available for Paralogs for MSX2P1 Gene

Variants for MSX2P1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional Variant Information for MSX2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MSX2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MSX2P1 Gene

Disorders for MSX2P1 Gene

Additional Disease Information for MSX2P1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MSX2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSX2P1 Gene

Publications for MSX2P1 Gene

  1. Identification of homeobox genes expressed in human haemopoietic progenitor cells. (PMID: 7518789) Moretti P … D'Andrea R (Gene 1994) 2 3
  2. Comprehensive comparative homeobox gene annotation in human and mouse. (PMID: 26412852) Wilming LG … Harrow JL (Database : the journal of biological databases and curation 2015) 3

ExternalLinks

View latest publications for MSX2P1 gene in Mastermind

Products for MSX2P1 Gene

Sources for MSX2P1 Gene