MSTO2P Gene (Pseudogene)

Misato Family Member 2, Pseudogene

GC01P155745
GIFtS:
13
See more...

Aliases for MSTO2P Gene

Aliases for MSTO2P Gene

  • Misato Family Member 2, Pseudogene 2 3 5
  • Misato Homolog 2 Pseudogene 2 3
  • Misato Homolog 2 (Drosophila) 2
  • MSTO2P 5
  • MSTO2 3

External Ids for MSTO2P Gene

Previous HGNC Symbols for MSTO2P Gene

  • MSTO2

Previous GeneCards Identifiers for MSTO2P Gene

  • GC01U901840
  • GC01P153981
  • GC01P155717
  • GC01P155583
  • GC01P155587

Summaries for MSTO2P Gene

GeneCards Summary for MSTO2P Gene

MSTO2P (Misato Family Member 2, Pseudogene) is a Pseudogene. Diseases associated with MSTO2P include Gastric Cancer.

Additional gene information for MSTO2P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MSTO2P Gene

Genomics for MSTO2P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MSTO2P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MSTO2P on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the MSTO2P gene promoter:
  • ATF-2
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • E47
  • GATA-1
  • PPAR-gamma2

Genomic Locations for MSTO2P Gene

Genomic Locations for MSTO2P Gene
chr1:155,745,768-155,750,688
(GRCh38/hg38)
Size:
4,921 bases
Orientation:
Plus strand
chr1:155,581,011-155,721,369
(GRCh37/hg19)
Size:
140,359 bases
Orientation:
Plus strand

Genomic View for MSTO2P Gene

Genes around MSTO2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSTO2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSTO2P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MSTO2P Gene

Proteins for MSTO2P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MSTO2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for MSTO2P Gene

Domains & Families for MSTO2P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MSTO2P Gene

Function for MSTO2P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for MSTO2P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MSTO2P Gene

Localization for MSTO2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MSTO2P Gene

Pathways & Interactions for MSTO2P Gene

PathCards logo

SuperPathways for MSTO2P Gene

No Data Available

Gene Ontology (GO) - Biological Process for MSTO2P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MSTO2P Gene

Drugs & Compounds for MSTO2P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MSTO2P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MSTO2P Gene

6 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MSTO2P Gene

No ASD Table

Relevant External Links for MSTO2P Gene

GeneLoc Exon Structure for
MSTO2P

Expression for MSTO2P Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MSTO2P Gene

mRNA expression in normal human tissues for MSTO2P Gene
mRNA expression by GTEx for MSTO2P GenemRNA expression by BioGPS for MSTO2P Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MSTO2P

SOURCE GeneReport for Unigene cluster for MSTO2P Gene:

Hs.720829
genes like me logo Genes that share expression patterns with MSTO2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MSTO2P Gene

Orthologs for MSTO2P Gene

Evolution for MSTO2P Gene

ENSEMBL:
Gene Tree for MSTO2P (if available)
TreeFam:
Gene Tree for MSTO2P (if available)

No data available for Orthologs for MSTO2P Gene

Paralogs for MSTO2P Gene

No data available for Paralogs for MSTO2P Gene

Variants for MSTO2P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Structural Variations from Database of Genomic Variants (DGV) for MSTO2P Gene

Variant ID Type Subtype PubMed ID
esv2718418 CNV deletion 23290073
esv2718429 CNV deletion 23290073
esv33869 CNV loss 17666407
esv3890671 CNV gain 25118596
nsv3043 CNV deletion 18451855
nsv3065 CNV deletion 18451855
nsv428246 CNV gain 18775914
nsv436522 CNV deletion 17901297
nsv482134 CNV gain 20164927
nsv547965 CNV gain 21841781
nsv946419 CNV duplication 23825009
nsv946422 CNV duplication 23825009

Additional Variant Information for MSTO2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MSTO2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for MSTO2P Gene

Disorders for MSTO2P Gene

MalaCards: The human disease database

(1) MalaCards diseases for MSTO2P Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MSTO2P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with MSTO2P: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MSTO2P Gene

Publications for MSTO2P Gene

  1. An anthropoid-specific segmental duplication on human chromosome 1q22. (PMID: 16545939) Kuryshev VY … Wiemann S (Genomics 2006) 2 3
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  3. Long non-coding RNA MSTO2P promotes the proliferation and colony formation in gastric cancer by indirectly regulating miR-335 expression. (PMID: 28618927) Li H … Lv L (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2017) 3
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for MSTO2P gene in Mastermind

Products for MSTO2P Gene

Sources for MSTO2P Gene