MSH5 Gene (Protein Coding)

MutS Homolog 5

GC06P033420
GIFtS:
41
This gene encodes a member of the mutS family of proteins that are involved in DNA mismatch repair and meiotic recombination. This protein is similar to a Saccharomyces cerevisiae protein that participates in segregation fidelity and crossing-over events during meiosis. This protein plays a role in promoting ionizing radiation-induced apoptosis. This protein forms hetero-oligom... See more...

Aliases for MSH5 Gene

Aliases for MSH5 Gene

  • MutS Homolog 5 2 3 5
  • MutS Protein Homolog 5 3 4
  • MutS (E. Coli) Homolog 5 2
  • MutS Homolog 5 (E. Coli) 2
  • MUTSH5 3
  • POF13 3
  • HMSH5 4
  • NG23 3
  • G7 3

External Ids for MSH5 Gene

Previous GeneCards Identifiers for MSH5 Gene

  • GC06P031771
  • GC06P031478
  • GC06P031812
  • GC06P031815
  • GC06P031707
  • GC06P031740
  • GC06P031745
  • GC06P032328
  • GC06P032514
  • GC06P032620
  • GC06P031781
  • GC06P031860
  • GC06P031888
  • GC06P031921
  • GC06P031962
  • GC06P032026
  • GC06P032205
  • GC06P032234

Summaries for MSH5 Gene

Entrez Gene Summary for MSH5 Gene

  • This gene encodes a member of the mutS family of proteins that are involved in DNA mismatch repair and meiotic recombination. This protein is similar to a Saccharomyces cerevisiae protein that participates in segregation fidelity and crossing-over events during meiosis. This protein plays a role in promoting ionizing radiation-induced apoptosis. This protein forms hetero-oligomers with another member of this family, mutS homolog 4. Polymorphisms in this gene have been linked to various human diseases, including IgA deficiency, common variable immunodeficiency, and premature ovarian failure. Alternative splicing results multiple transcript variants. Read-through transcription also exists between this gene and the downstream chromosome 6 open reading frame 26 (C6orf26) gene. [provided by RefSeq, Feb 2011]

GeneCards Summary for MSH5 Gene

MSH5 (MutS Homolog 5) is a Protein Coding gene. Diseases associated with MSH5 include Premature Ovarian Failure 13 and Hemangioma Of Intra-Abdominal Structure. Among its related pathways are Meiosis and Cell Cycle, Mitotic. Gene Ontology (GO) annotations related to this gene include damaged DNA binding and mismatched DNA binding. An important paralog of this gene is MSH5-SAPCD1.

UniProtKB/Swiss-Prot Summary for MSH5 Gene

  • Involved in DNA mismatch repair and meiotic recombination processes. Facilitates crossovers between homologs during meiosis (By similarity).

Gene Wiki entry for MSH5 Gene

Additional gene information for MSH5 Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MSH5 Gene

Genomics for MSH5 Gene

GeneHancer (GH) Regulatory Elements for MSH5 Gene

Promoters and enhancers for MSH5 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MSH5 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for MSH5

Top Transcription factor binding sites by QIAGEN in the MSH5 gene promoter:
  • GATA-2
  • p53
  • Sp1

Genomic Locations for MSH5 Gene

Genomic Locations for MSH5 Gene
chr6:31,739,677-31,762,678
(GRCh38/hg38)
Size:
23,002 bases
Orientation:
Plus strand
chr6:31,707,725-31,732,622
(GRCh37/hg19)
Size:
24,898 bases
Orientation:
Plus strand

Genomic View for MSH5 Gene

Genes around MSH5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSH5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSH5 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MSH5 Gene

Proteins for MSH5 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for MSH5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O43196-MSH5_HUMAN
    Recommended name:
    MutS protein homolog 5
    Protein Accession:
    O43196
    Secondary Accessions:
    • B0V033
    • B0V034
    • O60586
    • Q5BLU9
    • Q5SSR1
    • Q8IW44
    • Q9BQC7

    Protein attributes for MSH5 Gene

    Size:
    834 amino acids
    Molecular mass:
    92875 Da
    Quaternary structure:
    • Heterooligomer of MSH4 and MSH5. Interacts with HJURP.

    Alternative splice isoforms for MSH5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MSH5 Gene

Protein Expression for MSH5 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for MSH5 Gene

  • Ubiquitination at Lys105 and Lys584
  • Modification sites at PhosphoSitePlus

Other Protein References for MSH5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MSH5 Gene

Domains & Families for MSH5 Gene

Gene Families for MSH5 Gene

HGNC:
Human Protein Atlas (HPA):
  • Disease related genes
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for MSH5 Gene

Blocks:
  • MutS III
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MSH5 Gene

GenScript: Design optimal peptide antigens:
  • MutS homolog 5 (E. coli) (A2ABE9_HUMAN)
  • cDNA FLJ39914 fis, clone SPLEN2018732, highly similar to MutS protein homolog 5 (A2ABF0_HUMAN)
  • MutS homolog 5 (E. coli) (A2ABF1_HUMAN)
  • MutS homolog 5 (E. coli) (A2BEX1_HUMAN)
  • MutS homolog 5 (E. coli) (A2BEX2_HUMAN)

Graphical View of Domain Structure for InterPro Entry

O43196

UniProtKB/Swiss-Prot:

MSH5_HUMAN :
  • Belongs to the DNA mismatch repair MutS family.
Family:
  • Belongs to the DNA mismatch repair MutS family.
genes like me logo Genes that share domains with MSH5: view

Function for MSH5 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for MSH5 Gene

UniProtKB/Swiss-Prot Function:
Involved in DNA mismatch repair and meiotic recombination processes. Facilitates crossovers between homologs during meiosis (By similarity).
GENATLAS Biochemistry:
yeast meiosis specific protein,mutator gene homolog (bacteria Mut S homolog 5) interacting with MSH4,92.9kDa,ubiquitous,mostly expressed in testis,thymus, and immune system,putatively required for chromosome pairing in meiosis and DNA replicative mismatch repair

Phenotypes From GWAS Catalog for MSH5 Gene

Gene Ontology (GO) - Molecular Function for MSH5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0005515 protein binding IPI 16397227
GO:0005524 ATP binding IBA,IEA 21873635
GO:0008094 DNA-dependent ATPase activity IBA 21873635
GO:0030983 mismatched DNA binding IEA --
genes like me logo Genes that share ontologies with MSH5: view
genes like me logo Genes that share phenotypes with MSH5: view

Human Phenotype Ontology for MSH5 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for MSH5 Gene

MGI Knock Outs for MSH5:
  • Msh5 Msh5<tm1Htr>
  • Msh5 Msh5<tm1Rak>
  • Msh5 Msh5<tm1b(EUCOMM)Wtsi>

Animal Model Products

CRISPR Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for MSH5 Gene

Localization for MSH5 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MSH5 gene
Compartment Confidence
nucleus 4
mitochondrion 2
cytosol 2
plasma membrane 1
extracellular 1
cytoskeleton 1
endoplasmic reticulum 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Endoplasmic reticulum (2)
  • Vesicles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for MSH5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA 21873635
genes like me logo Genes that share ontologies with MSH5: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for MSH5 Gene

Pathways & Interactions for MSH5 Gene

PathCards logo

SuperPathways for MSH5 Gene

genes like me logo Genes that share pathways with MSH5: view

Pathways by source for MSH5 Gene

1 BioSystems pathway for MSH5 Gene
3 Reactome pathways for MSH5 Gene

Gene Ontology (GO) - Biological Process for MSH5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006281 DNA repair IEA --
GO:0006298 mismatch repair IEA --
GO:0006974 cellular response to DNA damage stimulus IEA --
GO:0007131 reciprocal meiotic recombination IBA 21873635
GO:0051321 meiotic cell cycle IEA --
genes like me logo Genes that share ontologies with MSH5: view

No data available for SIGNOR curated interactions for MSH5 Gene

Drugs & Compounds for MSH5 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MSH5 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MSH5 Gene

4 REFSEQ mRNAs :
16 NCBI additional mRNA sequence :
21 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MSH5 Gene

No ASD Table

Relevant External Links for MSH5 Gene

GeneLoc Exon Structure for
MSH5

Expression for MSH5 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MSH5 Gene

mRNA expression in normal human tissues for MSH5 Gene
mRNA expression by GTEx for MSH5 GenemRNA expression by BioGPS for MSH5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for MSH5 Gene

This gene is overexpressed in Breast (22.9), Stomach (16.5), Ovary (6.4), and Gallbladder (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for MSH5 Gene



Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MSH5

SOURCE GeneReport for Unigene cluster for MSH5 Gene:

Hs.647011

mRNA Expression by UniProt/SwissProt for MSH5 Gene:

O43196-MSH5_HUMAN
Tissue specificity: Widely expressed, with high levels in testis and ovary, including granulosa cells (PubMed:9740671, PubMed:28175301). Also expressed in fetal ovary and adrenal gland (PubMed:28175301).

Evidence on tissue expression from TISSUES for MSH5 Gene

  • Skin(4.2)
  • Kidney(4.1)
genes like me logo Genes that share expression patterns with MSH5: view

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for MSH5 Gene

Orthologs for MSH5 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for MSH5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia MSH5 30
  • 99.6 (n)
-- 31
  • 97 (a)
 OneToMany
cow
(Bos Taurus)
 Mammalia MSH5 31 30
  • 90.3 (n)
 OneToMany
dog
(Canis familiaris)
 Mammalia MSH5 31 30
  • 88.56 (n)
 OneToMany
mouse
(Mus musculus)
 Mammalia Msh5 17 31 30
  • 87.09 (n)
rat
(Rattus norvegicus)
 Mammalia Msh5 30
  • 86.63 (n)
oppossum
(Monodelphis domestica)
 Mammalia -- 31
  • 78 (a)
 OneToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia -- 31
  • 70 (a)
 ManyToMany
-- 31
  • 64 (a)
 ManyToMany
-- 31
  • 60 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia -- 31
  • 66 (a)
 OneToMany
tropical clawed frog
(Silurana tropicalis)
 Amphibia msh5 30
  • 61.42 (n)
zebrafish
(Danio rerio)
 Actinopterygii msh5 30
  • 59.29 (n)
MSH5 31
  • 53 (a)
 OneToMany
African malaria mosquito
(Anopheles gambiae)
 Insecta AgaP_AGAP002642 30
  • 46.38 (n)
worm
(Caenorhabditis elegans)
 Secernentea msh-5 31 32 30
  • 42.09 (n)
 OneToMany
baker's yeast
(Saccharomyces cerevisiae)
 Saccharomycetes MSH5 31 30
  • 42.96 (n)
 OneToMany
K. lactis yeast
(Kluyveromyces lactis)
 Saccharomycetes KLLA0C16423g 30
  • 40.67 (n)
thale cress
(Arabidopsis thaliana)
 eudicotyledons MSH5 30
  • 44.12 (n)
rice
(Oryza sativa)
 Liliopsida Os05g0498300 30
  • 45.43 (n)
bread mold
(Neurospora crassa)
 Ascomycetes NCU09384 30
  • 45.13 (n)
sea squirt
(Ciona savignyi)
 Ascidiacea -- 31
  • 41 (a)
 OneToMany
Species where no ortholog for MSH5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MSH5 Gene

ENSEMBL:
Gene Tree for MSH5 (if available)
TreeFam:
Gene Tree for MSH5 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for MSH5: view image

Paralogs for MSH5 Gene

Paralogs for MSH5 Gene

(3) SIMAP similar genes for MSH5 Gene using alignment to 10 proteins:

  • MSH5_HUMAN
  • A2ABE9_HUMAN
  • A2ABF0_HUMAN
  • A2ABF1_HUMAN
  • B4DZX3_HUMAN
  • H0YDS7_HUMAN
  • H7C2J4_HUMAN
  • H7C572_HUMAN
  • H7C5D6_HUMAN
  • Q5SSR2_HUMAN
genes like me logo Genes that share paralogs with MSH5: view

Variants for MSH5 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MSH5 Gene

SNP ID Clinical significance and condition Chr 06 pos Variation AA Info Type
rs1060505055 Pathogenic: Premature ovarian failure 13. Premature ovarian failure 13 (POF13) [MIM:617442] 31,759,476(+) G/Tp.Asp487Tyr MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
rs2075789 Benign: not specified. - 31,740,551(+) C/Tp.Pro29Ser MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
rs3115672 Benign: not specified 31,760,120(+) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
rs6905572 Benign: not specified 31,764,104(+) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
rs707938 Benign: not specified 31,761,582(+) A/G NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for MSH5 Gene

Structural Variations from Database of Genomic Variants (DGV) for MSH5 Gene

Variant ID Type Subtype PubMed ID
dgv10403n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
esv2763547 CNV loss 21179565
esv3608568 CNV loss 21293372
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
nsv819978 CNV loss 19587683

Variation tolerance for MSH5 Gene

Residual Variation Intolerance Score: 13.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.61; 78.18% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for MSH5 Gene

Human Gene Mutation Database (HGMD)
MSH5
SNPedia medical, phenotypic, and genealogical associations of SNPs for
MSH5

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MSH5 Gene

Disorders for MSH5 Gene

MalaCards: The human disease database

(6) MalaCards diseases for MSH5 Gene - From: UniProtKB/Swiss-Prot, OMIM, ClinVar, GTR, DISEASES, and GeneCards