Aliases for MRTFA-AS1 Gene

Subcategory (RNA class) for MRTFA-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MRTFA-AS1 Gene

  • MRTFA Antisense RNA 1 2 3 5
  • MRTFA-AS1 2 168
  • NONHSAG033988 92
  • HSALNG0135561 167

External Ids for MRTFA-AS1 Gene

Summaries for MRTFA-AS1 Gene

GeneCards Summary for MRTFA-AS1 Gene

MRTFA-AS1 (MRTFA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MRTFA-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MRTFA-AS1 Gene

Genomics for MRTFA-AS1 Gene

GeneHancer (GH) Regulatory Elements for MRTFA-AS1 Gene

Promoters and enhancers for MRTFA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J040522 Enhancer 0.3 Ensembl 500.7 +0.6 601 0.4 PRDM1 MRTFA-AS1 piR-43099-394 MRTFA
GH22J040650 Promoter/Enhancer 2 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 11.3 +131.5 131533 4.9 ZSCAN5C NRF1 POLR2G USF1 GTF2E2 PHF8 JUND FOS ZFX ZNF639 LOC105373038 HSALNG0135568 EP300 XPNPEP3 ENSG00000272834 RPL4P6 EP300-AS1 PHF5A ENSG00000232754 GAPDHP37
GH22J040382 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.4 -135.3 -135327 7.9 NRF1 CTBP1 SKI POLR2A NCOR1 FOXA2 ZNF316 ZBTB17 SAP130 PBX2 ENSG00000229999 SGSM3 ADSL MRTFA MRTFA-AS1 ENSG00000284431
GH22J040496 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.5 -23.2 -23200 5.2 FOXK2 ZSCAN5C TCF12 NCOR1 JUND FOS ZNF639 KDM6A TCF7 AFF1 MRTFA-AS1 MRTFA L3MBTL2 piR-31432-457 piR-46662-448 piR-53431-462 piR-61028-384 piR-42694-103
GH22J040679 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE CraniofacialAtlas 10.5 +157.9 157852 1.7 ZNF341 NR2F2 PCBP1 ZBTB33 ZFHX2 GATA3 EZH2 EGR1 RAD21 RXRA MCHR1 XPNPEP3 MRTFA-AS1 ST13 lnc-MKL1-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MRTFA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MRTFA-AS1 Gene

Genomic Locations for MRTFA-AS1 Gene
chr22:40,521,800-40,561,397
(GRCh38/hg38)
Size:
39,598 bases
Orientation:
Plus strand
chr22:40,917,804-40,922,711
(GRCh37/hg19)
Size:
4,908 bases
Orientation:
Plus strand

Genomic View for MRTFA-AS1 Gene

Genes around MRTFA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRTFA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRTFA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRTFA-AS1 Gene

Proteins for MRTFA-AS1 Gene

Post-translational modifications for MRTFA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MRTFA-AS1 Gene

Domains & Families for MRTFA-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MRTFA-AS1 Gene

Function for MRTFA-AS1 Gene

Phenotypes From GWAS Catalog for MRTFA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MRTFA-AS1 Gene

Localization for MRTFA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MRTFA-AS1 Gene

Pathways & Interactions for MRTFA-AS1 Gene

PathCards logo

SuperPathways for MRTFA-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MRTFA-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MRTFA-AS1 Gene

Drugs & Compounds for MRTFA-AS1 Gene

No Compound Related Data Available

Transcripts for MRTFA-AS1 Gene

mRNA/cDNA for MRTFA-AS1 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MRTFA-AS1 Gene

No ASD Table

Relevant External Links for MRTFA-AS1 Gene

GeneLoc Exon Structure for
MRTFA-AS1

Expression for MRTFA-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MRTFA-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MRTFA-AS1 Gene

Orthologs for MRTFA-AS1 Gene

Evolution for MRTFA-AS1 Gene

ENSEMBL:
Gene Tree for MRTFA-AS1 (if available)
TreeFam:
Gene Tree for MRTFA-AS1 (if available)

No data available for Orthologs for MRTFA-AS1 Gene

Paralogs for MRTFA-AS1 Gene

No data available for Paralogs for MRTFA-AS1 Gene

Variants for MRTFA-AS1 Gene

Additional dbSNP identifiers (rs#s) for MRTFA-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MRTFA-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv771n67 CNV gain 20364138
esv3568411 CNV loss 25503493
nsv1160763 CNV duplication 26073780
nsv459886 CNV loss 19166990
nsv589046 CNV loss 21841781
nsv589047 CNV loss 21841781
nsv829234 CNV loss 20364138

Additional Variant Information for MRTFA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRTFA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MRTFA-AS1 Gene

Disorders for MRTFA-AS1 Gene

Additional Disease Information for MRTFA-AS1

No disorders were found for MRTFA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MRTFA-AS1 Gene

Publications for MRTFA-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for MRTFA-AS1 Gene

Products for MRTFA-AS1 Gene

Sources for MRTFA-AS1 Gene