Aliases for MRPS9-AS2 Gene

Data sources for MRPS9-AS2 Gene:

RNA type for MRPS9-AS2 Gene

lncRNA

Aliases for MRPS9-AS2 Gene

External Ids for MRPS9-AS2 Gene

Summaries for MRPS9-AS2 Gene

GeneCards Summary for MRPS9-AS2 Gene

MRPS9-AS2 (MRPS9 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MRPS9-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MRPS9-AS2 Gene

Genomics for MRPS9-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MRPS9-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J105037 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 +0.8 812 3 SP1 ZNF207 MYC SSRP1 ZNF580 POLR2A YY1 CEBPB KLF11 SMAD5 MRPS9 HSALNG0017552 MRPS9-AS2 TGFBRAP1 GPR45
GH02J104976 Enhancer 0.7 ENCODE 11.8 +62.5 62494 1 BCLAF1 BCL11A CTCF GABPA IRF4 SMC3 GABPB1 ZBTB40 SPI1 EHMT2 HSALNG0017555 lnc-TGFBRAP1-15 MRPS9 MRPS9-AS2 HSALNG0017554 POU3F3
GH02J105005 Enhancer 0.8 Ensembl ENCODE 10.5 +33.8 33832 1.4 JUND YY1 ZNF217 FOXA2 CTBP1 RXRA GATA3 FOXA1 DPF2 RAD21 MRPS9 MRPS9-AS2 HSALNG0017555 lnc-TGFBRAP1-15 POU3F3
GH02J104969 Enhancer 0.6 Ensembl ENCODE 10.7 +69.7 69695 1.2 ZNF316 NFE2 JUND MAFG NANOG BACH1 MRPS9 MRPS9-AS2 HSALNG0017555 lnc-TGFBRAP1-15 HSALNG0017554 POU3F3
GH02J104939 Enhancer 0.5 Ensembl CraniofacialAtlas 10.4 +99.5 99512 1.6 HNF1A SP1 MRPS9 MRPS9-AS2 HSALNG0017553-001 HSALNG0017549-001 HSALNG0017549-002 POU3F3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MRPS9-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MRPS9-AS2 Gene

Latest Assembly
chr2:104,935,882-105,039,313
(GRCh38/hg38)
Size:
103,432 bases
Orientation:
Minus strand

Previous Assembly
chr2:105,552,699-105,654,954
(GRCh37/hg19 by Entrez Gene)
Size:
102,256 bases
Orientation:
Minus strand

chr2:105,552,869-105,654,954
(GRCh37/hg19 by Ensembl)
Size:
102,086 bases
Orientation:
Minus strand

Genomic View for MRPS9-AS2 Gene

Genes around MRPS9-AS2 on UCSC Golden Path with GeneCards custom track
MRPS9-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MRPS9-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPS9-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPS9-AS2 Gene

Proteins for MRPS9-AS2 Gene

Post-translational modifications for MRPS9-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MRPS9-AS2 Gene

Domains & Families for MRPS9-AS2 Gene

Gene Families for MRPS9-AS2 Gene

genes like me logo Genes that share domains with MRPS9-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MRPS9-AS2 Gene

Function for MRPS9-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MRPS9-AS2 Gene

Localization for MRPS9-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MRPS9-AS2 Gene

Pathways & Interactions for MRPS9-AS2 Gene

PathCards logo

SuperPathways for MRPS9-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MRPS9-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MRPS9-AS2 Gene

Drugs & Compounds for MRPS9-AS2 Gene

No Compound Related Data Available

Transcripts for MRPS9-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MRPS9-AS2 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008C41E2_9606 lncRNA 642 2

Ensembl: ENST00000456519 (view in UCSC) ,

LNCipedia: lnc-TGFBRAP1-4:2,

URS000075B9F9_9606 lncRNA 642 1

RefSeq: NR_110603,

URS0000D58A12_9606 lncRNA 1363 2

LncBook: HSALNT0037046,

LNCipedia: lnc-TGFBRAP1-4:7,

URS00002E6B57_9606 lncRNA 475 2

LNCipedia: lnc-TGFBRAP1-4:1,

NONCODE: NONHSAT072967.2,

URS00009C1A45_9606 lncRNA 472 2

LncBook: HSALNT0037055,

NONCODE: NONHSAT185257.1,

MRPS9-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MRPS9-AS2 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MRPS9-AS2 Gene

No ASD Table

Relevant External Links for MRPS9-AS2 Gene

GeneLoc Exon Structure for
MRPS9-AS2

Expression for MRPS9-AS2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MRPS9-AS2 Gene

Orthologs for MRPS9-AS2 Gene

Evolution for MRPS9-AS2 Gene

ENSEMBL:
Gene Tree for MRPS9-AS2 (if available)
TreeFam:
Gene Tree for MRPS9-AS2 (if available)
Alliance of Genome Resources:
Additional Orthologs for MRPS9-AS2

No data available for Orthologs for MRPS9-AS2 Gene

Paralogs for MRPS9-AS2 Gene

No data available for Paralogs for MRPS9-AS2 Gene

Variants for MRPS9-AS2 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MRPS9-AS2 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MRPS9-AS2 Gene

Variant ID Type Subtype PubMed ID
esv995428 CNV insertion 20482838
nsv2862 CNV insertion 18451855
nsv478337 CNV novel sequence insertion 20440878
nsv507025 OTHER sequence alteration 20534489
nsv511074 OTHER complex 20534489
nsv512775 CNV insertion 21212237
nsv820123 CNV gain 19587683
nsv961846 CNV duplication 23825009

Additional Variant Information for MRPS9-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRPS9-AS2
Leiden Open Variation Database (LOVD)
MRPS9-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MRPS9-AS2 Gene

Disorders for MRPS9-AS2 Gene

No disorders were found for MRPS9-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for MRPS9-AS2 Gene

Publications for MRPS9-AS2 Gene

No publications were found for MRPS9-AS2 Gene.

No data available for Mastermind for MRPS9-AS2 Gene

Products for MRPS9-AS2 Gene

Sources for MRPS9-AS2 Gene