Aliases for MRPS9-AS2 Gene

Subcategory (RNA class) for MRPS9-AS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MRPS9-AS2 Gene

  • MRPS9 Antisense RNA 2 2 3
  • Novel Transcript 5
  • Lnc-TGFBRAP1-4 168
  • NONHSAG028811 92
  • HSALNG0017552 167
  • AC010884.1 5
  • MRPS9-AS2 2

External Ids for MRPS9-AS2 Gene

Summaries for MRPS9-AS2 Gene

GeneCards Summary for MRPS9-AS2 Gene

MRPS9-AS2 (MRPS9 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MRPS9-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MRPS9-AS2 Gene

Genomics for MRPS9-AS2 Gene

GeneHancer (GH) Regulatory Elements for MRPS9-AS2 Gene

Promoters and enhancers for MRPS9-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J105037 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 +0.0 4 3 ZBTB40 ZNF217 EP300 SIN3A NRF1 TCF12 POLR2G SP1 GTF2E2 PHF8 MRPS9 MRPS9-AS2
GH02J105080 Enhancer 1.4 VISTA UCNEbase Ensembl ENCODE 11 -41.6 -41646 3.1 EP300 SMC3 MXI1 EGR1 FOXP2 CTCF CTBP2 ZBTB6 POLR2A RAD21 MRPS9 MRPS9-AS2 lnc-MRPS9-1 piR-38562-038
GH02J104976 Enhancer 0.8 ENCODE 11.8 +61.7 61686 1 CTCF EP300 GABPA POLR2A BCL11A TCF12 SMC3 NBN SPI1 GABPB1 lnc-TGFBRAP1-15 MRPS9 MRPS9-AS2 ENSG00000287135
GH02J105005 Enhancer 0.8 Ensembl ENCODE 10.5 +33.2 33204 1 ZNF217 CTBP1 FOXA2 TCF12 JUND GATA3 FOXA1 DPF2 RXRA HNF4A MRPS9 MRPS9-AS2 lnc-TGFBRAP1-15
GH02J104969 Enhancer 0.7 Ensembl ENCODE 10.7 +68.8 68804 1 ZNF316 FOS NANOG NFE2 MAFG POLR2A JUND MAFK BACH1 MRPS9 MRPS9-AS2 lnc-TGFBRAP1-15 ENSG00000287135
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MRPS9-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MRPS9-AS2 Gene

Genomic Locations for MRPS9-AS2 Gene
chr2:104,935,883-105,038,505
(GRCh38/hg38)
Size:
102,623 bases
Orientation:
Minus strand

Genomic View for MRPS9-AS2 Gene

Genes around MRPS9-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRPS9-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPS9-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPS9-AS2 Gene

Proteins for MRPS9-AS2 Gene

Post-translational modifications for MRPS9-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MRPS9-AS2 Gene

Domains & Families for MRPS9-AS2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MRPS9-AS2 Gene

Function for MRPS9-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MRPS9-AS2 Gene

Localization for MRPS9-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MRPS9-AS2 Gene

Pathways & Interactions for MRPS9-AS2 Gene

PathCards logo

SuperPathways for MRPS9-AS2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MRPS9-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MRPS9-AS2 Gene

Drugs & Compounds for MRPS9-AS2 Gene

No Compound Related Data Available

Transcripts for MRPS9-AS2 Gene

mRNA/cDNA for MRPS9-AS2 Gene

9 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MRPS9-AS2 Gene

No ASD Table

Relevant External Links for MRPS9-AS2 Gene

GeneLoc Exon Structure for
MRPS9-AS2

Expression for MRPS9-AS2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MRPS9-AS2 Gene

Orthologs for MRPS9-AS2 Gene

Evolution for MRPS9-AS2 Gene

ENSEMBL:
Gene Tree for MRPS9-AS2 (if available)
TreeFam:
Gene Tree for MRPS9-AS2 (if available)

No data available for Orthologs for MRPS9-AS2 Gene

Paralogs for MRPS9-AS2 Gene

No data available for Paralogs for MRPS9-AS2 Gene

Variants for MRPS9-AS2 Gene

Additional dbSNP identifiers (rs#s) for MRPS9-AS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for MRPS9-AS2 Gene

Variant ID Type Subtype PubMed ID
esv995428 CNV insertion 20482838
nsv2862 CNV insertion 18451855
nsv478337 CNV novel sequence insertion 20440878
nsv507025 OTHER sequence alteration 20534489
nsv511074 OTHER complex 20534489
nsv512775 CNV insertion 21212237
nsv820123 CNV gain 19587683
nsv961846 CNV duplication 23825009

Additional Variant Information for MRPS9-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRPS9-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MRPS9-AS2 Gene

Disorders for MRPS9-AS2 Gene

No disorders were found for MRPS9-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for MRPS9-AS2 Gene

Publications for MRPS9-AS2 Gene

No publications were found for MRPS9-AS2 Gene.

No data available for Mastermind for MRPS9-AS2 Gene

Products for MRPS9-AS2 Gene

Sources for MRPS9-AS2 Gene