Aliases for MRPS30-DT Gene

Subcategory (RNA class) for MRPS30-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MRPS30-DT Gene

  • MRPS30 Divergent Transcript 2 3 5
  • Breast Cancer-Associated Transcript 54 2 3
  • MRPS30-DT 2 168
  • HSALNG0041561 167
  • NONHSAG040329 92
  • BRCAT54 3

External Ids for MRPS30-DT Gene

Summaries for MRPS30-DT Gene

GeneCards Summary for MRPS30-DT Gene

MRPS30-DT (MRPS30 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MRPS30-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MRPS30-DT Gene

Genomics for MRPS30-DT Gene

GeneHancer (GH) Regulatory Elements for MRPS30-DT Gene

Promoters and enhancers for MRPS30-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J044807 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 14.1 +34.9 34896 4.2 EP300 ZBTB40 ZNF217 CTCF NRF1 MYC POLR2G USF1 SP1 NCOR1 MRPS30 NONHSAG040331.2 ENSG00000272335 FGF10-AS1 MRPS30-DT
GH05J044874 Enhancer 1.2 FANTOM5 Ensembl ENCODE 12.2 -31.3 -31329 2.6 SP1 JUND EP300 BCL11A SMARCC1 SMARCC2 FOS SRF BRF2 FOSL2 HSALNG0041571 ENSG00000272335 MRPS30-DT piR-36588-348
GH05J044788 Enhancer 0.6 Ensembl ENCODE 15.3 +55.0 54997 1.6 JUN JUND MAX piR-30465-030 MRPS30-DT ENSG00000272335 piR-59769-484
GH05J044690 Enhancer 0.8 Ensembl ENCODE 10.9 +153.0 153002 2.2 ZNF217 EP300 CTBP1 CEBPG CEBPB JUN JUND DPF2 ATF4 TCF7L2 MRPS30-DT LINC02224 ENSG00000250418
GH05J044813 Enhancer 0.4 Ensembl 0.3 +31.3 31296 0.6 NFE2 MAFG EMSY lnc-MRPS30-7 MRPS30 NONHSAG040331.2 MRPS30-DT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MRPS30-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for MRPS30-DT Gene

Genomic Locations for MRPS30-DT Gene
chr5:44,739,983-44,844,597
(GRCh38/hg38)
Size:
104,615 bases
Orientation:
Minus strand
chr5:44,744,517-44,808,879
(GRCh37/hg19)
Size:
64,363 bases
Orientation:
Minus strand

Genomic View for MRPS30-DT Gene

Genes around MRPS30-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRPS30-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPS30-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPS30-DT Gene

Proteins for MRPS30-DT Gene

Post-translational modifications for MRPS30-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for MRPS30-DT Gene

Domains & Families for MRPS30-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MRPS30-DT Gene

Function for MRPS30-DT Gene

Phenotypes From GWAS Catalog for MRPS30-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MRPS30-DT Gene

Localization for MRPS30-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MRPS30-DT Gene

Pathways & Interactions for MRPS30-DT Gene

PathCards logo

SuperPathways for MRPS30-DT Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MRPS30-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MRPS30-DT Gene

Drugs & Compounds for MRPS30-DT Gene

No Compound Related Data Available

Transcripts for MRPS30-DT Gene

mRNA/cDNA for MRPS30-DT Gene

41 RNACentral transcripts :
4 REFSEQ mRNAs :
7 NCBI additional mRNA sequence :
10 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
13 NONCODE transcripts :
4 LncBook transcripts :
36 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MRPS30-DT Gene

No ASD Table

Relevant External Links for MRPS30-DT Gene

GeneLoc Exon Structure for
MRPS30-DT

Expression for MRPS30-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MRPS30-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MRPS30-DT Gene

Orthologs for MRPS30-DT Gene

Evolution for MRPS30-DT Gene

ENSEMBL:
Gene Tree for MRPS30-DT (if available)
TreeFam:
Gene Tree for MRPS30-DT (if available)

No data available for Orthologs for MRPS30-DT Gene

Paralogs for MRPS30-DT Gene

No data available for Paralogs for MRPS30-DT Gene

Variants for MRPS30-DT Gene

Additional dbSNP identifiers (rs#s) for MRPS30-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for MRPS30-DT Gene

Variant ID Type Subtype PubMed ID
dgv162n73 CNV deletion 24416366
esv1931459 CNV deletion 18987734
esv2481524 CNV deletion 19546169
esv2730149 CNV deletion 23290073
esv3293718 CNV deletion 24192839
esv3565877 CNV deletion 23714750
esv3604930 CNV loss 21293372
esv3604931 CNV loss 21293372
esv7480 CNV loss 19470904
nsv1027897 CNV gain 25217958
nsv1072121 CNV deletion 25765185
nsv1117553 CNV deletion 24896259
nsv462127 CNV loss 19166990
nsv513233 CNV loss 21212237
nsv597933 CNV loss 21841781
nsv597934 CNV loss 21841781
nsv830279 CNV gain 17160897

Additional Variant Information for MRPS30-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRPS30-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MRPS30-DT Gene

Disorders for MRPS30-DT Gene

Additional Disease Information for MRPS30-DT

No disorders were found for MRPS30-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MRPS30-DT Gene

Publications for MRPS30-DT Gene

  1. Evidence that the 5p12 Variant rs10941679 Confers Susceptibility to Estrogen-Receptor-Positive Breast Cancer through FGF10 and MRPS30 Regulation. (PMID: 27640304) Ghoussaini M … Edwards SL (American journal of human genetics 2016) 2 3 54
  2. Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes. (PMID: 16368877) Choy KW … Pang CP (Physiological genomics 2006) 3 54
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

Products for MRPS30-DT Gene

Sources for MRPS30-DT Gene